HL_6AWD_033

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWD_033 not in the Motif Atlas

Geometric match to HL_6N5P_004

Geometric discrepancy: 0.3794

The information below is about HL_6N5P_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6AWD|1|A|U|157
6AWD|1|A|G|158
6AWD|1|A|G|159
6AWD|1|A|A|160
6AWD|1|A|A|161
6AWD|1|A|A|162
6AWD|1|A|C|163
6AWD|1|A|G|164

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

30S ribosomal protein S20