HL_6AZ1_004

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6AZ1|1|1|C|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_004 not in the Motif Atlas

Geometric match to HL_7RQB_046

Geometric discrepancy: 0.0992

The information below is about HL_7RQB_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6AZ1|1|1|C|159
6AZ1|1|1|G|160
6AZ1|1|1|A|161
6AZ1|1|1|A|162
6AZ1|1|1|A|163
6AZ1|1|1|C|164
6AZ1|1|1|G|165

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain G

ribosomal protein S6e

Chain Z

ribosomal protein S24e