RNA 3D Hub //

6AZ1 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6AZ1_0011/1/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6AZ1_0041/1/159:165GNRA
geometric
HL_7RQB_046
NA
HL_6AZ1_0061/1/291:298T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6AZ1_0081/1/374:382GNRA related
homologous
HL_4V88_193
NA
HL_6AZ1_0091/1/411:416No text annotation
homologous
HL_4V88_194
NA
HL_6AZ1_0101/1/436:447No text annotation
homologous
HL_4V88_195
NA
HL_6AZ1_0111/1/457:462UNCG
homologous
HL_4V88_196
NA
HL_6AZ1_0121/1/493:504No text annotation
homologous
HL_4V88_197
NA
HL_6AZ1_0141/1/564:577No text annotation
geometric
HL_4WFL_001
HL_05304.3
HL_6AZ1_0151/1/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_6AZ1_0181/1/865:873No text annotation
homologous
HL_4V88_203
NA
HL_6AZ1_0201/1/957:978No text annotation
geometric
HL_8VTW_010
NA
HL_6AZ1_0211/1/1147:1156No text annotation
homologous
HL_4V88_206
NA
HL_6AZ1_0221/1/1184:1189GNRA
homologous
HL_4V88_207
NA
HL_6AZ1_0231/1/1244:1254No text annotation
homologous
HL_4V88_208
NA
HL_6AZ1_0251/1/1434:1439GNRA
homologous
HL_4V88_210
NA
HL_6AZ1_0471/1/1473:1478GNRA
homologous
HL_8C3A_216
NA
HL_6AZ1_0271/1/1540:1549No text annotation
homologous
HL_8P9A_215
HL_50779.4
HL_6AZ1_0281/1/1590:1599Anticodon loop related
homologous
HL_4V88_213
NA
HL_6AZ1_0291/1/1648:1653GNRA
geometric
HL_5J7L_027
HL_37824.8
HL_6AZ1_0301/1/1661:1668No text annotation
homologous
HL_4V88_215
NA
HL_6AZ1_0341/1/1915:1924No text annotation
HL_6AZ1_0351/1/1969:1980No text annotation
geometric
HL_4V88_219
NA
HL_6AZ1_0361/1/2013:2023No text annotation
geometric
HL_5J7L_029
HL_06226.4
HL_6AZ1_0371/1/2181:2186GNRA variation
homologous
HL_4V88_222
NA
HL_6AZ1_0511/2/13:22tRNA D-loop
homologous
HL_6JXM_001
HL_20811.4
HL_6AZ1_0391/2/31:39tRNA anticodon loop
homologous
HL_4V9I_039
HL_06059.7
HL_6AZ1_0401/2/52:62No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_6AZ1_0411/3/13:22No text annotation
homologous
HL_5UD5_001
HL_48417.6
HL_6AZ1_0421/3/31:39tRNA anticodon loop
homologous
HL_5E81_212
HL_06059.7
HL_6AZ1_0431/3/53:61T-loop with 2 stacked bulged bases
homologous
HL_6PMO_005
NA
HL_6AZ1_0441/4/13:22No text annotation
homologous
HL_3WFS_001
NA
HL_6AZ1_0501/4/31:39tRNA anticodon loop
homologous
HL_7OSM_116
HL_06059.7
HL_6AZ1_0521/4/53:61No text annotation

Problematic loops

#loop idProblemSequence
HL_6AZ1_002No text annotation
HL_6AZ1_003Mini UNCG related
HL_6AZ1_005No text annotation
HL_6AZ1_007No text annotation
HL_6AZ1_013No text annotation
HL_6AZ1_016No text annotation
HL_6AZ1_017No text annotation
HL_6AZ1_019No text annotation
HL_6AZ1_024No text annotation
HL_6AZ1_026GNRA with extra cWW
HL_6AZ1_031No text annotation
HL_6AZ1_032No text annotation
HL_6AZ1_033No text annotation
HL_6AZ1_038No text annotation
HL_6AZ1_048No text annotation
HL_6AZ1_049No text annotation
HL_6AZ1_045No text annotation
HL_6AZ1_046No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6AZ1_0021/1/24:26,
1/1/649:650		Single bulged C
homologous
IL_4V88_384
NA
IL_6AZ1_0041/1/37:41,
1/1/514:519		Triple sheared related
homologous
IL_4V88_386
NA
IL_6AZ1_0051/1/42:48,
1/1/474:476		No text annotation
geometric
IL_4V88_387
NA
IL_6AZ1_0061/1/50:52,
1/1/471:472		Minor groove platform
homologous
IL_4V88_388
NA
IL_6AZ1_0071/1/58:63,
1/1/85:87		No text annotation
homologous
IL_4V88_389
NA
IL_6AZ1_0081/1/64:69,
1/1/80:84		No text annotation
homologous
IL_4V88_390
NA
IL_6AZ1_0091/1/107:110,
1/1/346:349		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_6AZ1_0101/1/111:114,
1/1/344:345		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6AZ1_0801/1/115:119,
1/1/340:343		No text annotation
geometric
IL_4LFB_008
IL_64231.5
IL_6AZ1_0121/1/120:122,
1/1/337:339		Isolated non-canonical cWW pair
geometric
IL_4M4O_001
IL_87907.2
IL_6AZ1_0131/1/148:154,
1/1/170:177		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6AZ1_0141/1/239:240,
1/1/307:311		Multiple bulged bases
geometric
IL_4YAZ_007
IL_82107.5
IL_6AZ1_0161/1/355:360,
1/1/392:399		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6AZ1_0171/1/362:367,
1/1/389:390		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_6AZ1_0181/1/371:373,
1/1/383:385		Isolated non-canonical cWW pair
geometric
IL_3RW6_004
IL_87907.2
IL_6AZ1_0191/1/406:408,
1/1/419:424		No text annotation
homologous
IL_4V88_404
NA
IL_6AZ1_0201/1/432:434,
1/1/449:451		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6AZ1_0211/1/482:484,
1/1/511:512		Single bulged U
homologous
IL_4V88_407
NA
IL_6AZ1_0811/1/486:490,
1/1/508:509		No text annotation
homologous
IL_8P9A_397
IL_03109.3
IL_6AZ1_0231/1/490:491,
1/1/506:508		Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_6AZ1_0241/1/561:562,
1/1/579:585		Multiple bulged bases
geometric
IL_1FUF_002
IL_82107.5
IL_6AZ1_0251/1/599:606,
1/1/636:637		SSU/LSU pseudoknot
homologous
IL_4V88_413
NA
IL_6AZ1_0821/1/606:608,
1/1/635:636		No text annotation
IL_6AZ1_0261/1/611:617,
1/1/624:632		Kink-turn related
homologous
IL_4V88_415
NA
IL_6AZ1_0271/1/665:671,
1/1/1456:1457		No text annotation
homologous
IL_4V88_416
NA
IL_6AZ1_0281/1/676:680,
1/1/1215:1219		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6AZ1_0291/1/690:695,
1/1/750:755		No text annotation
geometric
IL_6O5F_001
NA
IL_6AZ1_0301/1/846:848,
1/1/903:907		No text annotation
IL_6AZ1_0311/1/852:860,
1/1/892:899		No text annotation
homologous
IL_4V88_425
NA
IL_6AZ1_0831/1/951:956,
1/1/979:984		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.1
IL_6AZ1_0341/1/1111:1113,
1/1/1208:1212		No text annotation
geometric
IL_5J7L_332
IL_61476.2
IL_6AZ1_0351/1/1114:1115,
1/1/1205:1207		Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_6AZ1_0371/1/1121:1125,
1/1/1197:1200		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_6AZ1_0841/1/1132:1136,
1/1/1170:1174		Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_49751.4
IL_6AZ1_0391/1/1138:1140,
1/1/1166:1168		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_87907.2
IL_6AZ1_0401/1/1142:1146,
1/1/1157:1164		Kink-turn
homologous
IL_4V88_434
NA
IL_6AZ1_0411/1/1232:1237,
1/1/1261:1263		Other IL
geometric
IL_4V88_435
NA
IL_6AZ1_0421/1/1237:1241,
1/1/1257:1261		tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_6AZ1_0431/1/1281:1283,
1/1/1447:1453		No text annotation
homologous
IL_4V88_437
NA
IL_6AZ1_0441/1/1291:1293,
1/1/1421:1423		Isolated non-canonical cWW pair
geometric
IL_5VCI_002
IL_87907.2
IL_6AZ1_0461/1/1463:1470,
1/1/1481:1486		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6AZ1_0471/1/1498:1499,
1/1/2050:2052		Single bulged A
homologous
IL_4V88_441
NA
IL_6AZ1_0851/1/1501:1503,
1/1/2047:2048		Single bulged G
homologous
IL_8C3A_448
NA
IL_6AZ1_0491/1/1509:1512,
1/1/2037:2041		C-loop
homologous
IL_4V88_443
NA
IL_6AZ1_0861/1/1524:1526,
1/1/1866:1868		Isolated non-canonical cWW pair
homologous
IL_8P9A_432
IL_87907.2
IL_6AZ1_0511/1/1530:1531,
1/1/1860:1862		Minor groove platform
homologous
IL_4V88_445
NA
IL_6AZ1_0521/1/1565:1567,
1/1/1849:1851		Isolated non-canonical cWW pair
homologous
IL_4V88_446
NA
IL_6AZ1_0531/1/1575:1582,
1/1/1609:1612		No text annotation
IL_6AZ1_0871/1/1575:1585,
1/1/1604:1612		No text annotation
IL_6AZ1_0541/1/1582:1585,
1/1/1604:1609		No text annotation
IL_6AZ1_0551/1/1586:1588,
1/1/1601:1603		No text annotation
homologous
IL_4V88_448
NA
IL_6AZ1_0881/1/1620:1622,
1/1/1841:1842		Single bulged U
homologous
IL_8C3A_455
NA
IL_6AZ1_0891/1/1624:1628,
1/1/1837:1839		No text annotation
homologous
IL_8C3A_456
NA
IL_6AZ1_0901/1/1624:1630,
1/1/1831:1839		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_6AZ1_0571/1/1628:1630,
1/1/1831:1837		Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_6AZ1_0911/1/1632:1633,
1/1/1827:1829		Single bulged A
homologous
IL_8C3A_458
NA
IL_6AZ1_0591/1/1642:1644,
1/1/1675:1677		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6AZ1_0611/1/1693:1696,
1/1/1779:1782		No text annotation
IL_6AZ1_0621/1/1696:1699,
1/1/1776:1779		Minor groove platform
geometric
IL_4V88_456
NA
IL_6AZ1_0641/1/1788:1790,
1/1/1808:1813		No text annotation
homologous
IL_8C3A_465
NA
IL_6AZ1_0651/1/1877:1878,
1/1/1948:1950		Single bulged A
geometric
IL_4AOB_001
IL_31462.7
IL_6AZ1_0661/1/1878:1879,
1/1/1946:1948		Single bulged A
geometric
IL_1I9X_001
IL_31462.7
IL_6AZ1_0921/1/1881:1889,
1/1/1935:1944		No text annotation
IL_6AZ1_0671/1/1959:1964,
1/1/1985:1991		No text annotation
homologous
IL_4V88_462
NA
IL_6AZ1_0681/1/1966:1969,
1/1/1980:1983		Tandem non-canonical cWW pairs
geometric
IL_4WF9_109
NA
IL_6AZ1_0691/1/2056:2058,
1/1/2167:2170		No text annotation
homologous
IL_4V88_463
NA
IL_6AZ1_0931/1/2058:2061,
1/1/2163:2167		No text annotation
homologous
IL_8C3A_471
NA
IL_6AZ1_0711/1/2062:2064,
1/1/2160:2162		Isolated non-canonical cWW pair
geometric
IL_3GM7_005
IL_87907.2
IL_6AZ1_0721/1/2064:2066,
1/1/2157:2160		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_6AZ1_0741/1/2073:2076,
1/1/2147:2150		Double sheared
homologous
IL_4V88_468
NA
IL_6AZ1_0751/1/2076:2079,
1/1/2144:2147		Tandem non-canonical cWW pairs
geometric
IL_4EYA_010
IL_51479.1
IL_6AZ1_0941/1/2081:2083,
1/1/2140:2142		Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_87907.2
IL_6AZ1_0951/1/2083:2085,
1/1/2138:2140		Isolated non-canonical cWW pair
homologous
IL_8P9A_459
IL_07785.1
IL_6AZ1_0771/1/2088:2091,
1/1/2132:2135		Double sheared
homologous
IL_4V88_471
NA
IL_6AZ1_0781/1/2095:2097,
1/1/2126:2128		Isolated non-canonical cWW pair
geometric
IL_1ZX7_004
NA
IL_6AZ1_0791/1/2097:2101,
1/1/2122:2126		Triple sheared
geometric
IL_7RQB_075
NA

Problematic loops

#loop idProblemSequence
IL_6AZ1_001Isolated non-canonical cWW pair
IL_6AZ1_003Isolated non-canonical cWW pair
IL_6AZ1_011No text annotation
IL_6AZ1_015No text annotation
IL_6AZ1_022No text annotation
IL_6AZ1_032No text annotation
IL_6AZ1_033No text annotation
IL_6AZ1_036Tandem non-canonical cWW pairs
IL_6AZ1_038No text annotation
IL_6AZ1_045No text annotation
IL_6AZ1_048Isolated non-canonical cWW pair
IL_6AZ1_050No text annotation
IL_6AZ1_056No text annotation
IL_6AZ1_058Isolated non-canonical cWW pair
IL_6AZ1_060Isolated non-canonical cWW pair
IL_6AZ1_063Isolated non-canonical cWW pair
IL_6AZ1_070No text annotation
IL_6AZ1_073Isolated non-canonical cWW pair
IL_6AZ1_076No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6AZ1_0011/1/41:42,
1/1/476:482,
1/1/512:514		No text annotation
geometric
J3_8C3A_082
NA
J3_6AZ1_0151/1/41:48,
1/1/474:482,
1/1/512:514		No text annotation
homologous
J3_8C3A_083
NA
J3_6AZ1_0021/1/682:685,
1/1/1106:1111,
1/1/1212:1213		No text annotation
J3_6AZ1_0161/1/682:685,
1/1/1106:1113,
1/1/1208:1213		No text annotation
J3_6AZ1_0041/1/1130:1131,
1/1/1175:1183,
1/1/1190:1192		No text annotation
J3_6AZ1_0061/1/1513:1516,
1/1/2001:2007,
1/1/2029:2036		No text annotation
homologous
J3_8C3A_038
NA
J3_6AZ1_0071/1/1520:1523,
1/1/1869:1871,
1/1/1994:1997		No text annotation
homologous
J3_8C3A_039
NA
J3_6AZ1_0171/1/1532:1539,
1/1/1550:1561,
1/1/1855:1859		No text annotation
homologous
J3_8C3A_040
NA
J3_6AZ1_0181/1/1567:1572,
1/1/1615:1619,
1/1/1843:1849		No text annotation
homologous
J3_8C3A_041
NA
J3_6AZ1_0201/1/1635:1640,
1/1/1679:1684,
1/1/1820:1825		No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_6AZ1_0111/1/1645:1646,
1/1/1655:1660,
1/1/1669:1674		No text annotation
J3_6AZ1_0121/1/1688:1690,
1/1/1785:1788,
1/1/1813:1816		No text annotation
geometric
J3_4V88_040
NA
J3_6AZ1_0191/1/1688:1690,
1/1/1785:1790,
1/1/1808:1816		No text annotation
homologous
J3_8P9A_083
J3_88233.1
J3_6AZ1_0131/1/1871:1875,
1/1/1952:1959,
1/1/1991:1994		No text annotation
homologous
J3_8C3A_044
NA
J3_6AZ1_0141/1/1889:1896,
1/1/1905:1909,
1/1/1930:1935		No text annotation
J4_6AZ1_0011/1/97:105,
1/1/351:353,
1/1/401:404,
1/1/426:427		No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_6AZ1_0021/1/671:673,
1/1/1222:1227,
1/1/1268:1279,
1/1/1455:1456		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J4_6AZ1_0051/2/6:10,
1/2/25:27,
1/2/43:50,
1/2/64:67		No text annotation
J4_6AZ1_0061/3/7:10,
1/3/25:27,
1/3/43:50,
1/3/64:66		No text annotation
J5_6AZ1_0011/1/31:35,
1/1/521:526,
1/1/555:561,
1/1/585:595,
1/1/641:644		No text annotation
J5_6AZ1_0021/1/54:57,
1/1/88:95,
1/1/429:431,
1/1/452:454,
1/1/465:469		No text annotation
homologous
J5_8C3A_020
NA
J6_6AZ1_0011/1/123:129,
1/1/143:148,
1/1/177:189,
1/1/236:238,
1/1/312:317,
1/1/332:336		No text annotation

Problematic loops

#loop idProblemSequence
J3_6AZ1_003No text annotation
J3_6AZ1_005No text annotation
J3_6AZ1_008No text annotation
J3_6AZ1_009No text annotation
J3_6AZ1_010No text annotation
J4_6AZ1_003No text annotation
J4_6AZ1_004No text annotation

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