6AZ1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_6AZ1_001 | 1/1/7:17 | No text annotation | homologous HL_4V88_186 NA | |
HL_6AZ1_004 | 1/1/159:165 | GNRA | geometric HL_7RQB_046 NA | |
HL_6AZ1_006 | 1/1/291:298 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
HL_6AZ1_008 | 1/1/374:382 | GNRA related | homologous HL_4V88_193 NA | |
HL_6AZ1_009 | 1/1/411:416 | No text annotation | homologous HL_4V88_194 NA | |
HL_6AZ1_010 | 1/1/436:447 | No text annotation | homologous HL_4V88_195 NA | |
HL_6AZ1_011 | 1/1/457:462 | UNCG | homologous HL_4V88_196 NA | |
HL_6AZ1_012 | 1/1/493:504 | No text annotation | homologous HL_4V88_197 NA | |
HL_6AZ1_014 | 1/1/564:577 | No text annotation | geometric HL_4WFL_001 HL_05304.3 | |
HL_6AZ1_015 | 1/1/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
HL_6AZ1_018 | 1/1/865:873 | No text annotation | homologous HL_4V88_203 NA | |
HL_6AZ1_020 | 1/1/957:978 | No text annotation | geometric HL_8VTW_010 NA | |
HL_6AZ1_021 | 1/1/1147:1156 | No text annotation | homologous HL_4V88_206 NA | |
HL_6AZ1_022 | 1/1/1184:1189 | GNRA | homologous HL_4V88_207 NA | |
HL_6AZ1_023 | 1/1/1244:1254 | No text annotation | homologous HL_4V88_208 NA | |
HL_6AZ1_025 | 1/1/1434:1439 | GNRA | homologous HL_4V88_210 NA | |
HL_6AZ1_047 | 1/1/1473:1478 | GNRA | homologous HL_8C3A_216 NA | |
HL_6AZ1_027 | 1/1/1540:1549 | No text annotation | homologous HL_8P9A_215 HL_50779.4 | |
HL_6AZ1_028 | 1/1/1590:1599 | Anticodon loop related | homologous HL_4V88_213 NA | |
HL_6AZ1_029 | 1/1/1648:1653 | GNRA | geometric HL_5J7L_027 HL_37824.8 | |
HL_6AZ1_030 | 1/1/1661:1668 | No text annotation | homologous HL_4V88_215 NA | |
HL_6AZ1_034 | 1/1/1915:1924 | No text annotation | ||
HL_6AZ1_035 | 1/1/1969:1980 | No text annotation | geometric HL_4V88_219 NA | |
HL_6AZ1_036 | 1/1/2013:2023 | No text annotation | geometric HL_5J7L_029 HL_06226.4 | |
HL_6AZ1_037 | 1/1/2181:2186 | GNRA variation | homologous HL_4V88_222 NA | |
HL_6AZ1_051 | 1/2/13:22 | tRNA D-loop | homologous HL_6JXM_001 HL_20811.4 | |
HL_6AZ1_039 | 1/2/31:39 | tRNA anticodon loop | homologous HL_4V9I_039 HL_06059.7 | |
HL_6AZ1_040 | 1/2/52:62 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
HL_6AZ1_041 | 1/3/13:22 | No text annotation | homologous HL_5UD5_001 HL_48417.6 | |
HL_6AZ1_042 | 1/3/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.7 | |
HL_6AZ1_043 | 1/3/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6PMO_005 NA | |
HL_6AZ1_044 | 1/4/13:22 | No text annotation | homologous HL_3WFS_001 NA | |
HL_6AZ1_050 | 1/4/31:39 | tRNA anticodon loop | homologous HL_7OSM_116 HL_06059.7 | |
HL_6AZ1_052 | 1/4/53:61 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_6AZ1_002 | No text annotation | ||
HL_6AZ1_003 | Mini UNCG related | ||
HL_6AZ1_005 | No text annotation | ||
HL_6AZ1_007 | No text annotation | ||
HL_6AZ1_013 | No text annotation | ||
HL_6AZ1_016 | No text annotation | ||
HL_6AZ1_017 | No text annotation | ||
HL_6AZ1_019 | No text annotation | ||
HL_6AZ1_024 | No text annotation | ||
HL_6AZ1_026 | GNRA with extra cWW | ||
HL_6AZ1_031 | No text annotation | ||
HL_6AZ1_032 | No text annotation | ||
HL_6AZ1_033 | No text annotation | ||
HL_6AZ1_038 | No text annotation | ||
HL_6AZ1_048 | No text annotation | ||
HL_6AZ1_049 | No text annotation | ||
HL_6AZ1_045 | No text annotation | ||
HL_6AZ1_046 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_6AZ1_002 | 1/1/24:26, 1/1/649:650 | Single bulged C | homologous IL_4V88_384 NA | |
IL_6AZ1_004 | 1/1/37:41, 1/1/514:519 | Triple sheared related | homologous IL_4V88_386 NA | |
IL_6AZ1_005 | 1/1/42:48, 1/1/474:476 | No text annotation | geometric IL_4V88_387 NA | |
IL_6AZ1_006 | 1/1/50:52, 1/1/471:472 | Minor groove platform | homologous IL_4V88_388 NA | |
IL_6AZ1_007 | 1/1/58:63, 1/1/85:87 | No text annotation | homologous IL_4V88_389 NA | |
IL_6AZ1_008 | 1/1/64:69, 1/1/80:84 | No text annotation | homologous IL_4V88_390 NA | |
IL_6AZ1_009 | 1/1/107:110, 1/1/346:349 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
IL_6AZ1_010 | 1/1/111:114, 1/1/344:345 | Multiple bulged bases | homologous IL_4V88_392 NA | |
IL_6AZ1_080 | 1/1/115:119, 1/1/340:343 | No text annotation | geometric IL_4LFB_008 IL_64231.5 | |
IL_6AZ1_012 | 1/1/120:122, 1/1/337:339 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_87907.2 | |
IL_6AZ1_013 | 1/1/148:154, 1/1/170:177 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
IL_6AZ1_014 | 1/1/239:240, 1/1/307:311 | Multiple bulged bases | geometric IL_4YAZ_007 IL_82107.5 | |
IL_6AZ1_016 | 1/1/355:360, 1/1/392:399 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
IL_6AZ1_017 | 1/1/362:367, 1/1/389:390 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
IL_6AZ1_018 | 1/1/371:373, 1/1/383:385 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_87907.2 | |
IL_6AZ1_019 | 1/1/406:408, 1/1/419:424 | No text annotation | homologous IL_4V88_404 NA | |
IL_6AZ1_020 | 1/1/432:434, 1/1/449:451 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
IL_6AZ1_021 | 1/1/482:484, 1/1/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
IL_6AZ1_081 | 1/1/486:490, 1/1/508:509 | No text annotation | homologous IL_8P9A_397 IL_03109.3 | |
IL_6AZ1_023 | 1/1/490:491, 1/1/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
IL_6AZ1_024 | 1/1/561:562, 1/1/579:585 | Multiple bulged bases | geometric IL_1FUF_002 IL_82107.5 | |
IL_6AZ1_025 | 1/1/599:606, 1/1/636:637 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
IL_6AZ1_082 | 1/1/606:608, 1/1/635:636 | No text annotation | ||
IL_6AZ1_026 | 1/1/611:617, 1/1/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
IL_6AZ1_027 | 1/1/665:671, 1/1/1456:1457 | No text annotation | homologous IL_4V88_416 NA | |
IL_6AZ1_028 | 1/1/676:680, 1/1/1215:1219 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
IL_6AZ1_029 | 1/1/690:695, 1/1/750:755 | No text annotation | geometric IL_6O5F_001 NA | |
IL_6AZ1_030 | 1/1/846:848, 1/1/903:907 | No text annotation | ||
IL_6AZ1_031 | 1/1/852:860, 1/1/892:899 | No text annotation | homologous IL_4V88_425 NA | |
IL_6AZ1_083 | 1/1/951:956, 1/1/979:984 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.1 | |
IL_6AZ1_034 | 1/1/1111:1113, 1/1/1208:1212 | No text annotation | geometric IL_5J7L_332 IL_61476.2 | |
IL_6AZ1_035 | 1/1/1114:1115, 1/1/1205:1207 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
IL_6AZ1_037 | 1/1/1121:1125, 1/1/1197:1200 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
IL_6AZ1_084 | 1/1/1132:1136, 1/1/1170:1174 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_49751.4 | |
IL_6AZ1_039 | 1/1/1138:1140, 1/1/1166:1168 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_87907.2 | |
IL_6AZ1_040 | 1/1/1142:1146, 1/1/1157:1164 | Kink-turn | homologous IL_4V88_434 NA | |
IL_6AZ1_041 | 1/1/1232:1237, 1/1/1261:1263 | Other IL | geometric IL_4V88_435 NA | |
IL_6AZ1_042 | 1/1/1237:1241, 1/1/1257:1261 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
IL_6AZ1_043 | 1/1/1281:1283, 1/1/1447:1453 | No text annotation | homologous IL_4V88_437 NA | |
IL_6AZ1_044 | 1/1/1291:1293, 1/1/1421:1423 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_87907.2 | |
IL_6AZ1_046 | 1/1/1463:1470, 1/1/1481:1486 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
IL_6AZ1_047 | 1/1/1498:1499, 1/1/2050:2052 | Single bulged A | homologous IL_4V88_441 NA | |
IL_6AZ1_085 | 1/1/1501:1503, 1/1/2047:2048 | Single bulged G | homologous IL_8C3A_448 NA | |
IL_6AZ1_049 | 1/1/1509:1512, 1/1/2037:2041 | C-loop | homologous IL_4V88_443 NA | |
IL_6AZ1_086 | 1/1/1524:1526, 1/1/1866:1868 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_87907.2 | |
IL_6AZ1_051 | 1/1/1530:1531, 1/1/1860:1862 | Minor groove platform | homologous IL_4V88_445 NA | |
IL_6AZ1_052 | 1/1/1565:1567, 1/1/1849:1851 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
IL_6AZ1_053 | 1/1/1575:1582, 1/1/1609:1612 | No text annotation | ||
IL_6AZ1_087 | 1/1/1575:1585, 1/1/1604:1612 | No text annotation | ||
IL_6AZ1_054 | 1/1/1582:1585, 1/1/1604:1609 | No text annotation | ||
IL_6AZ1_055 | 1/1/1586:1588, 1/1/1601:1603 | No text annotation | homologous IL_4V88_448 NA | |
IL_6AZ1_088 | 1/1/1620:1622, 1/1/1841:1842 | Single bulged U | homologous IL_8C3A_455 NA | |
IL_6AZ1_089 | 1/1/1624:1628, 1/1/1837:1839 | No text annotation | homologous IL_8C3A_456 NA | |
IL_6AZ1_090 | 1/1/1624:1630, 1/1/1831:1839 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
IL_6AZ1_057 | 1/1/1628:1630, 1/1/1831:1837 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
IL_6AZ1_091 | 1/1/1632:1633, 1/1/1827:1829 | Single bulged A | homologous IL_8C3A_458 NA | |
IL_6AZ1_059 | 1/1/1642:1644, 1/1/1675:1677 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
IL_6AZ1_061 | 1/1/1693:1696, 1/1/1779:1782 | No text annotation | ||
IL_6AZ1_062 | 1/1/1696:1699, 1/1/1776:1779 | Minor groove platform | geometric IL_4V88_456 NA | |
IL_6AZ1_064 | 1/1/1788:1790, 1/1/1808:1813 | No text annotation | homologous IL_8C3A_465 NA | |
IL_6AZ1_065 | 1/1/1877:1878, 1/1/1948:1950 | Single bulged A | geometric IL_4AOB_001 IL_31462.7 | |
IL_6AZ1_066 | 1/1/1878:1879, 1/1/1946:1948 | Single bulged A | geometric IL_1I9X_001 IL_31462.7 | |
IL_6AZ1_092 | 1/1/1881:1889, 1/1/1935:1944 | No text annotation | ||
IL_6AZ1_067 | 1/1/1959:1964, 1/1/1985:1991 | No text annotation | homologous IL_4V88_462 NA | |
IL_6AZ1_068 | 1/1/1966:1969, 1/1/1980:1983 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
IL_6AZ1_069 | 1/1/2056:2058, 1/1/2167:2170 | No text annotation | homologous IL_4V88_463 NA | |
IL_6AZ1_093 | 1/1/2058:2061, 1/1/2163:2167 | No text annotation | homologous IL_8C3A_471 NA | |
IL_6AZ1_071 | 1/1/2062:2064, 1/1/2160:2162 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_87907.2 | |
IL_6AZ1_072 | 1/1/2064:2066, 1/1/2157:2160 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
IL_6AZ1_074 | 1/1/2073:2076, 1/1/2147:2150 | Double sheared | homologous IL_4V88_468 NA | |
IL_6AZ1_075 | 1/1/2076:2079, 1/1/2144:2147 | Tandem non-canonical cWW pairs | geometric IL_4EYA_010 IL_51479.1 | |
IL_6AZ1_094 | 1/1/2081:2083, 1/1/2140:2142 | Isolated non-canonical cWW pair | geometric IL_3GM7_002 IL_87907.2 | |
IL_6AZ1_095 | 1/1/2083:2085, 1/1/2138:2140 | Isolated non-canonical cWW pair | homologous IL_8P9A_459 IL_07785.1 | |
IL_6AZ1_077 | 1/1/2088:2091, 1/1/2132:2135 | Double sheared | homologous IL_4V88_471 NA | |
IL_6AZ1_078 | 1/1/2095:2097, 1/1/2126:2128 | Isolated non-canonical cWW pair | geometric IL_1ZX7_004 NA | |
IL_6AZ1_079 | 1/1/2097:2101, 1/1/2122:2126 | Triple sheared | geometric IL_7RQB_075 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_6AZ1_001 | Isolated non-canonical cWW pair | ||
IL_6AZ1_003 | Isolated non-canonical cWW pair | ||
IL_6AZ1_011 | No text annotation | ||
IL_6AZ1_015 | No text annotation | ||
IL_6AZ1_022 | No text annotation | ||
IL_6AZ1_032 | No text annotation | ||
IL_6AZ1_033 | No text annotation | ||
IL_6AZ1_036 | Tandem non-canonical cWW pairs | ||
IL_6AZ1_038 | No text annotation | ||
IL_6AZ1_045 | No text annotation | ||
IL_6AZ1_048 | Isolated non-canonical cWW pair | ||
IL_6AZ1_050 | No text annotation | ||
IL_6AZ1_056 | No text annotation | ||
IL_6AZ1_058 | Isolated non-canonical cWW pair | ||
IL_6AZ1_060 | Isolated non-canonical cWW pair | ||
IL_6AZ1_063 | Isolated non-canonical cWW pair | ||
IL_6AZ1_070 | No text annotation | ||
IL_6AZ1_073 | Isolated non-canonical cWW pair | ||
IL_6AZ1_076 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_6AZ1_001 | 1/1/41:42, 1/1/476:482, 1/1/512:514 | No text annotation | geometric J3_8C3A_082 NA | |
J3_6AZ1_015 | 1/1/41:48, 1/1/474:482, 1/1/512:514 | No text annotation | homologous J3_8C3A_083 NA | |
J3_6AZ1_002 | 1/1/682:685, 1/1/1106:1111, 1/1/1212:1213 | No text annotation | ||
J3_6AZ1_016 | 1/1/682:685, 1/1/1106:1113, 1/1/1208:1213 | No text annotation | ||
J3_6AZ1_004 | 1/1/1130:1131, 1/1/1175:1183, 1/1/1190:1192 | No text annotation | ||
J3_6AZ1_006 | 1/1/1513:1516, 1/1/2001:2007, 1/1/2029:2036 | No text annotation | homologous J3_8C3A_038 NA | |
J3_6AZ1_007 | 1/1/1520:1523, 1/1/1869:1871, 1/1/1994:1997 | No text annotation | homologous J3_8C3A_039 NA | |
J3_6AZ1_017 | 1/1/1532:1539, 1/1/1550:1561, 1/1/1855:1859 | No text annotation | homologous J3_8C3A_040 NA | |
J3_6AZ1_018 | 1/1/1567:1572, 1/1/1615:1619, 1/1/1843:1849 | No text annotation | homologous J3_8C3A_041 NA | |
J3_6AZ1_020 | 1/1/1635:1640, 1/1/1679:1684, 1/1/1820:1825 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
J3_6AZ1_011 | 1/1/1645:1646, 1/1/1655:1660, 1/1/1669:1674 | No text annotation | ||
J3_6AZ1_012 | 1/1/1688:1690, 1/1/1785:1788, 1/1/1813:1816 | No text annotation | geometric J3_4V88_040 NA | |
J3_6AZ1_019 | 1/1/1688:1690, 1/1/1785:1790, 1/1/1808:1816 | No text annotation | homologous J3_8P9A_083 J3_88233.1 | |
J3_6AZ1_013 | 1/1/1871:1875, 1/1/1952:1959, 1/1/1991:1994 | No text annotation | homologous J3_8C3A_044 NA | |
J3_6AZ1_014 | 1/1/1889:1896, 1/1/1905:1909, 1/1/1930:1935 | No text annotation | ||
J4_6AZ1_001 | 1/1/97:105, 1/1/351:353, 1/1/401:404, 1/1/426:427 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
J4_6AZ1_002 | 1/1/671:673, 1/1/1222:1227, 1/1/1268:1279, 1/1/1455:1456 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
J4_6AZ1_005 | 1/2/6:10, 1/2/25:27, 1/2/43:50, 1/2/64:67 | No text annotation | ||
J4_6AZ1_006 | 1/3/7:10, 1/3/25:27, 1/3/43:50, 1/3/64:66 | No text annotation | ||
J5_6AZ1_001 | 1/1/31:35, 1/1/521:526, 1/1/555:561, 1/1/585:595, 1/1/641:644 | No text annotation | ||
J5_6AZ1_002 | 1/1/54:57, 1/1/88:95, 1/1/429:431, 1/1/452:454, 1/1/465:469 | No text annotation | homologous J5_8C3A_020 NA | |
J6_6AZ1_001 | 1/1/123:129, 1/1/143:148, 1/1/177:189, 1/1/236:238, 1/1/312:317, 1/1/332:336 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_6AZ1_003 | No text annotation | ||
J3_6AZ1_005 | No text annotation | ||
J3_6AZ1_008 | No text annotation | ||
J3_6AZ1_009 | No text annotation | ||
J3_6AZ1_010 | No text annotation | ||
J4_6AZ1_003 | No text annotation | ||
J4_6AZ1_004 | No text annotation |
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