HL_6AZ1_011

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6AZ1|1|1|A|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_011 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1427

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6AZ1|1|1|C|457
6AZ1|1|1|U|458
6AZ1|1|1|A|459
6AZ1|1|1|C|460
6AZ1|1|1|G|461
6AZ1|1|1|G|462

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain G

ribosomal protein S6e