HL_6AZ1_016

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCGUCCAUUCGGAUG

Length

16 nucleotides

Bulged bases

6AZ1|1|1|U|727, 6AZ1|1|1|C|728

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6AZ1|1|1|C|717
6AZ1|1|1|C|718
6AZ1|1|1|C|719
6AZ1|1|1|G|720
6AZ1|1|1|U|721
6AZ1|1|1|C|722
6AZ1|1|1|C|723
6AZ1|1|1|A|724
6AZ1|1|1|U|725
6AZ1|1|1|U|727
6AZ1|1|1|C|728
6AZ1|1|1|G|729
6AZ1|1|1|G|730
6AZ1|1|1|A|731
6AZ1|1|1|U|732
6AZ1|1|1|G|738

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain B

ribosomal protein S2

Chain V

ribosomal protein S17e

Chain Y

ribosomal protein S21e