HL_6AZ1_017

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGUGGGGGCGU

Length

11 nucleotides

Bulged bases

6AZ1|1|1|G|789, 6AZ1|1|1|U|790, 6AZ1|1|1|G|791, 6AZ1|1|1|G|829

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6AZ1|1|1|A|788
6AZ1|1|1|G|789
6AZ1|1|1|U|790
6AZ1|1|1|G|791
6AZ1|1|1|G|792
6AZ1|1|1|G|829
6AZ1|1|1|G|830
6AZ1|1|1|G|831
6AZ1|1|1|C|832
6AZ1|1|1|G|833
6AZ1|1|1|U|834

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain E

ribosomal protein S4e

Chain G

ribosomal protein S6e