HL_6AZ1_022

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_022 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.1062

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6AZ1|1|1|C|1184
6AZ1|1|1|G|1185
6AZ1|1|1|A|1186
6AZ1|1|1|A|1187
6AZ1|1|1|G|1188
6AZ1|1|1|G|1189

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain T

ribosomal protein S15

Chain b

ribosomal protein S26e