HL_6AZ1_031
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGCCCAUAGGAUAGGCA
- Length
- 18 nucleotides
- Bulged bases
- 6AZ1|1|1|G|1712, 6AZ1|1|1|C|1715, 6AZ1|1|1|U|1717, 6AZ1|1|1|A|1718
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6AZ1_031 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.2536
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
6AZ1|1|1|U|1710
6AZ1|1|1|U|1711
6AZ1|1|1|G|1712
6AZ1|1|1|C|1713
6AZ1|1|1|C|1714
6AZ1|1|1|C|1715
6AZ1|1|1|A|1716
6AZ1|1|1|U|1717
6AZ1|1|1|A|1718
6AZ1|1|1|G|1719
6AZ1|1|1|G|1720
6AZ1|1|1|A|1721
6AZ1|1|1|U|1722
6AZ1|1|1|A|1723
6AZ1|1|1|G|1724
6AZ1|1|1|G|1760
6AZ1|1|1|C|1761
6AZ1|1|1|A|1762
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain H
- ribosomal protein S7
- Chain L
- ribosomal protein S9
- Chain X
- ribosomal protein S19e
- Chain a
- ribosomal protein S25e
Coloring options: