HL_6AZ1_041
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 6AZ1|1|3|C|16, 6AZ1|1|3|C|17, 6AZ1|1|3|U|18, 6AZ1|1|3|G|19, 6AZ1|1|3|G|20, 6AZ1|1|3|U|20|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6AZ1_041 not in the Motif Atlas
- Homologous match to HL_5UD5_001
- Geometric discrepancy: 0.2198
- The information below is about HL_5UD5_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- tRNA D-loop
- Motif group
- HL_89167.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
6AZ1|1|3|C|13
6AZ1|1|3|A|14
6AZ1|1|3|G|15
6AZ1|1|3|C|16
6AZ1|1|3|C|17
6AZ1|1|3|U|18
6AZ1|1|3|G|19
6AZ1|1|3|G|20
6AZ1|1|3|U|20|||A
6AZ1|1|3|A|21
6AZ1|1|3|G|22
Current chains
- Chain 3
- P-site tRNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
Coloring options: