HL_6B14_001

3D structure

PDB id

6B14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Spinach RNA aptamer in complex with Fab BL3-6S97N

Experimental method

X-RAY DIFFRACTION

Resolution

1.64 Å

Loop

Sequence

GAAACAC

Length

7 nucleotides

Bulged bases

6B14|1|R|A|38, 6B14|1|R|A|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B14_001 not in the Motif Atlas

Geometric match to HL_4KZD_001

Geometric discrepancy: 0.0324

The information below is about HL_4KZD_001

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_64036.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

28

Unit IDs

6B14|1|R|G|37
6B14|1|R|A|38
6B14|1|R|A|39
6B14|1|R|A|40
6B14|1|R|C|41
6B14|1|R|A|42
6B14|1|R|C|43

Current chains

Chain R

RNA (86-MER)

Nearby chains

Chain H

Heavy chain of Fab BL3-6S97N

Chain L

Light chain of Fab BL3-6S97N