HL_6B4V_004

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

6B4V|1|A|U|189, 6B4V|1|A|G|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_004 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1902

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

6B4V|1|A|C|186|||G
6B4V|1|A|C|187
6B4V|1|A|U|188
6B4V|1|A|U|189
6B4V|1|A|G|190
6B4V|1|A|G|191|||A

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain ZA

30S ribosomal protein S17