6B4V Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6B4V_001 | 1/A/12:22 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_6B4V_002 | 1/A/79:90 | No text annotation | ||
| HL_6B4V_003 | 1/A/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.4 | |
| HL_6B4V_004 | 1/A/186G:191A | No text annotation | homologous HL_4LFB_004 HL_89167.2 | |
| HL_6B4V_005 | 1/A/200:217 | No text annotation | ||
| HL_6B4V_232 | 1/A/259:267 | GNRA related | homologous HL_4LFB_006 HL_87268.2 | |
| HL_6B4V_007 | 1/A/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.4 | |
| HL_6B4V_008 | 1/A/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_6B4V_009 | 1/A/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.4 | |
| HL_6B4V_010 | 1/A/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_6B4V_011 | 1/A/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.4 | |
| HL_6B4V_233 | 1/A/457:475 | No text annotation | ||
| HL_6B4V_211 | 1/A/522:527 | GNRA variation | homologous HL_4LFB_033 HL_34789.4 | |
| HL_6B4V_014 | 1/A/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_6B4V_015 | 1/A/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.2 | |
| HL_6B4V_016 | 1/A/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.4 | |
| HL_6B4V_017 | 1/A/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_6B4V_018 | 1/A/837:849 | No text annotation | geometric HL_4V9F_011 HL_75660.8 | |
| HL_6B4V_019 | 1/A/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.4 | |
| HL_6B4V_020 | 1/A/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.4 | |
| HL_6B4V_021 | 1/A/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_6B4V_022 | 1/A/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.4 | |
| HL_6B4V_023 | 1/A/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.4 | |
| HL_6B4V_024 | 1/A/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_6B4V_025 | 1/A/1129:1143 | No text annotation | ||
| HL_6B4V_213 | 1/A/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.4 | |
| HL_6B4V_027 | 1/A/1264:1271 | GNRA with extra cWW | geometric HL_4WF9_053 HL_87268.2 | |
| HL_6B4V_028 | 1/A/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_6B4V_234 | 1/A/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_6B4V_030 | 1/A/1449:1454 | No text annotation | geometric HL_1WZ2_007 HL_75660.8 | |
| HL_6B4V_031 | 1/A/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.4 | |
| HL_6B4V_032 | 1/B/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6B4V_033 | 1/B/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6B4V_034 | 1/B/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_6B4V_035 | 1/B/137B:141B | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6B4V_036 | 1/B/154:172 | No text annotation | ||
| HL_6B4V_037 | 1/B/194:201 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_6B4V_038 | 1/B/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_6B4V_039 | 1/B/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_6B4V_235 | 1/B/270K:270Q | No text annotation | homologous HL_4WF9_009 HL_40612.1 | |
| HL_6B4V_041 | 1/B/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6B4V_042 | 1/B/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_6B4V_236 | 1/B/383:391 | No text annotation | ||
| HL_6B4V_044 | 1/B/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6B4V_045 | 1/B/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.4 | |
| HL_6B4V_046 | 1/B/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_6B4V_047 | 1/B/544:549 | No text annotation | geometric HL_5U3G_001 HL_75660.8 | |
| HL_6B4V_048 | 1/B/566:575 | T-loop with 2 stacked bulged bases | geometric HL_7A0S_018 HL_33597.3 | |
| HL_6B4V_049 | 1/B/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_6B4V_050 | 1/B/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_6B4V_051 | 1/B/641:647 | GNRA | homologous HL_4WF9_021 HL_34789.4 | |
| HL_6B4V_052 | 1/B/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6B4V_053 | 1/B/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6B4V_054 | 1/B/779:785 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_6B4V_055 | 1/B/826:831 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_6B4V_056 | 1/B/882:894 | No text annotation | ||
| HL_6B4V_057 | 1/B/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6B4V_058 | 1/B/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6B4V_059 | 1/B/1055:1104 | No text annotation | ||
| HL_6B4V_237 | 1/B/1171:1178 | No text annotation | ||
| HL_6B4V_061 | 1/B/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6B4V_062 | 1/B/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6B4V_063 | 1/B/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_6B4V_064 | 1/B/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6B4V_065 | 1/B/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6B4V_066 | 1/B/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_6B4V_067 | 1/B/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_6B4V_068 | 1/B/1533:1538 | No text annotation | ||
| HL_6B4V_069 | 1/B/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_6B4V_070 | 1/B/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6B4V_071 | 1/B/1630B:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6B4V_072 | 1/B/1691:1696 | UNCG | geometric HL_5J7L_175 NA | |
| HL_6B4V_073 | 1/B/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6B4V_074 | 1/B/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_6B4V_075 | 1/B/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6B4V_076 | 1/B/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6B4V_215 | 1/B/1910:1920 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_6B4V_078 | 1/B/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_61418.2 | |
| HL_6B4V_079 | 1/B/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6B4V_216 | 1/B/2129:2159 | No text annotation | ||
| HL_6B4V_080 | 1/B/2139:2152 | No text annotation | ||
| HL_6B4V_081 | 1/B/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_6B4V_082 | 1/B/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6B4V_083 | 1/B/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6B4V_238 | 1/B/2303:2313 | No text annotation | ||
| HL_6B4V_085 | 1/B/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6B4V_086 | 1/B/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6B4V_087 | 1/B/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6B4V_088 | 1/B/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_6B4V_089 | 1/B/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_6B4V_090 | 1/B/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6B4V_091 | 1/B/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_6B4V_092 | 1/B/2594:2599 | GNRA | homologous HL_4WF9_059 HL_34789.4 | |
| HL_6B4V_093 | 1/B/2658:2663 | GNRA | geometric HL_1MZP_001 HL_34789.4 | |
| HL_6B4V_094 | 1/B/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6B4V_095 | 1/B/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6B4V_096 | 1/B/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_6B4V_097 | 1/B/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6B4V_217 | 1/C/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_6B4V_098 | 1/C/38:44 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6B4V_218 | 1/C/86:90 | GNRA | homologous HL_4V9F_072 HL_34789.4 | |
| HL_6B4V_100 | 1/D/31:39 | No text annotation | homologous HL_4YCP_002 NA | |
| HL_6B4V_219 | 1/D/51:63 | No text annotation | homologous HL_5EL4_250 NA | |
| HL_6B4V_101 | 1/D/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1H3E_004 NA | |
| HL_6B4V_102 | 1/EB/12:22 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_6B4V_103 | 1/EB/79:90 | No text annotation | ||
| HL_6B4V_104 | 1/EB/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.4 | |
| HL_6B4V_105 | 1/EB/186G:191A | No text annotation | homologous HL_4LFB_004 HL_89167.2 | |
| HL_6B4V_106 | 1/EB/200:217 | No text annotation | ||
| HL_6B4V_239 | 1/EB/259:267 | GNRA related | homologous HL_4LFB_006 HL_87268.2 | |
| HL_6B4V_108 | 1/EB/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.4 | |
| HL_6B4V_109 | 1/EB/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_6B4V_110 | 1/EB/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.4 | |
| HL_6B4V_111 | 1/EB/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_6B4V_112 | 1/EB/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.4 | |
| HL_6B4V_240 | 1/EB/457:475 | tRNA anticodon loop | geometric HL_5UD5_002 HL_87306.2 | |
| HL_6B4V_222 | 1/EB/522:527 | GNRA variation | homologous HL_4LFB_033 HL_34789.4 | |
| HL_6B4V_115 | 1/EB/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_6B4V_116 | 1/EB/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.2 | |
| HL_6B4V_117 | 1/EB/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.4 | |
| HL_6B4V_118 | 1/EB/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_6B4V_119 | 1/EB/837:849 | No text annotation | geometric HL_4V9F_011 HL_75660.8 | |
| HL_6B4V_120 | 1/EB/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.4 | |
| HL_6B4V_121 | 1/EB/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.4 | |
| HL_6B4V_122 | 1/EB/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_6B4V_123 | 1/EB/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.4 | |
| HL_6B4V_124 | 1/EB/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.4 | |
| HL_6B4V_125 | 1/EB/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_6B4V_126 | 1/EB/1129:1143 | No text annotation | ||
| HL_6B4V_224 | 1/EB/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.4 | |
| HL_6B4V_128 | 1/EB/1264:1271 | GNRA with extra cWW | geometric HL_4WF9_053 HL_87268.2 | |
| HL_6B4V_129 | 1/EB/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_6B4V_241 | 1/EB/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_6B4V_131 | 1/EB/1449:1454 | No text annotation | geometric HL_1WZ2_007 HL_75660.8 | |
| HL_6B4V_132 | 1/EB/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.4 | |
| HL_6B4V_133 | 1/FB/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6B4V_134 | 1/FB/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6B4V_135 | 1/FB/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_6B4V_136 | 1/FB/137B:141B | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6B4V_137 | 1/FB/154:172 | No text annotation | ||
| HL_6B4V_138 | 1/FB/194:201 | No text annotation | homologous HL_5J7L_139 NA | |
| HL_6B4V_139 | 1/FB/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_6B4V_140 | 1/FB/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_6B4V_242 | 1/FB/270K:270Q | No text annotation | homologous HL_4WF9_009 HL_40612.1 | |
| HL_6B4V_142 | 1/FB/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6B4V_143 | 1/FB/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_6B4V_243 | 1/FB/383:391 | No text annotation | ||
| HL_6B4V_145 | 1/FB/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6B4V_146 | 1/FB/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.4 | |
| HL_6B4V_147 | 1/FB/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_6B4V_148 | 1/FB/544:549 | No text annotation | geometric HL_5U3G_001 HL_75660.8 | |
| HL_6B4V_149 | 1/FB/566:575 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.3 | |
| HL_6B4V_150 | 1/FB/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_6B4V_151 | 1/FB/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_6B4V_152 | 1/FB/641:647 | GNRA | homologous HL_4WF9_021 HL_34789.4 | |
| HL_6B4V_153 | 1/FB/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6B4V_154 | 1/FB/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6B4V_155 | 1/FB/779:785 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_6B4V_156 | 1/FB/826:831 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_6B4V_157 | 1/FB/882:894 | No text annotation | ||
| HL_6B4V_158 | 1/FB/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6B4V_159 | 1/FB/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6B4V_160 | 1/FB/1055:1104 | No text annotation | ||
| HL_6B4V_244 | 1/FB/1171:1178 | No text annotation | ||
| HL_6B4V_162 | 1/FB/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6B4V_163 | 1/FB/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6B4V_164 | 1/FB/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_6B4V_165 | 1/FB/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6B4V_166 | 1/FB/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6B4V_226 | 1/FB/1450:1461 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
| HL_6B4V_167 | 1/FB/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_6B4V_168 | 1/FB/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_6B4V_169 | 1/FB/1533:1538 | No text annotation | ||
| HL_6B4V_170 | 1/FB/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_6B4V_171 | 1/FB/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6B4V_172 | 1/FB/1630B:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6B4V_173 | 1/FB/1691:1696 | UNCG | geometric HL_5J7L_175 NA | |
| HL_6B4V_174 | 1/FB/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6B4V_175 | 1/FB/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_6B4V_176 | 1/FB/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6B4V_177 | 1/FB/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6B4V_227 | 1/FB/1910:1920 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_6B4V_179 | 1/FB/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_61418.2 | |
| HL_6B4V_180 | 1/FB/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6B4V_228 | 1/FB/2129:2159 | No text annotation | ||
| HL_6B4V_181 | 1/FB/2139:2152 | No text annotation | ||
| HL_6B4V_182 | 1/FB/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_6B4V_183 | 1/FB/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6B4V_184 | 1/FB/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6B4V_245 | 1/FB/2303:2313 | No text annotation | ||
| HL_6B4V_186 | 1/FB/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6B4V_187 | 1/FB/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6B4V_188 | 1/FB/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6B4V_189 | 1/FB/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_6B4V_190 | 1/FB/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_6B4V_191 | 1/FB/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6B4V_192 | 1/FB/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_6B4V_193 | 1/FB/2594:2599 | GNRA | homologous HL_4WF9_059 HL_34789.4 | |
| HL_6B4V_194 | 1/FB/2658:2663 | GNRA | geometric HL_1MZP_001 HL_34789.4 | |
| HL_6B4V_195 | 1/FB/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6B4V_196 | 1/FB/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6B4V_197 | 1/FB/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_6B4V_198 | 1/FB/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6B4V_229 | 1/GB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_6B4V_199 | 1/GB/38:44 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6B4V_230 | 1/GB/86:90 | GNRA | homologous HL_4V9F_072 HL_34789.4 | |
| HL_6B4V_201 | 1/HB/31:39 | tRNA anticodon loop | homologous HL_1H3E_002 NA | |
| HL_6B4V_231 | 1/HB/51:63 | No text annotation | homologous HL_5EL4_250 NA | |
| HL_6B4V_202 | 1/HB/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1H3E_004 NA | |
| HL_6B4V_203 | 1/IA/13:22 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_6B4V_204 | 1/IA/31:39 | tRNA anticodon loop | homologous HL_5E81_212 NA | |
| HL_6B4V_205 | 1/IA/51:63 | No text annotation | homologous HL_5EL4_223 NA | |
| HL_6B4V_206 | 1/MC/13:22 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_6B4V_207 | 1/MC/31:39 | tRNA anticodon loop | homologous HL_5E81_212 NA | |
| HL_6B4V_208 | 1/MC/51:63 | No text annotation | homologous HL_5EL4_223 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6B4V_209 | No text annotation | ||
| HL_6B4V_006 | tRNA D-loop | ||
| HL_6B4V_012 | No text annotation | ||
| HL_6B4V_210 | No text annotation | ||
| HL_6B4V_013 | No text annotation | ||
| HL_6B4V_212 | No text annotation | ||
| HL_6B4V_026 | GNRA with extra cWW | ||
| HL_6B4V_214 | No text annotation | ||
| HL_6B4V_029 | No text annotation | ||
| HL_6B4V_040 | No text annotation | ||
| HL_6B4V_043 | No text annotation | ||
| HL_6B4V_060 | No text annotation | ||
| HL_6B4V_077 | No text annotation | ||
| HL_6B4V_084 | No text annotation | ||
| HL_6B4V_099 | GNRA with extra cWW | ||
| HL_6B4V_220 | No text annotation | ||
| HL_6B4V_107 | tRNA D-loop | ||
| HL_6B4V_113 | No text annotation | ||
| HL_6B4V_221 | No text annotation | ||
| HL_6B4V_114 | No text annotation | ||
| HL_6B4V_223 | No text annotation | ||
| HL_6B4V_127 | GNRA with extra cWW | ||
| HL_6B4V_225 | No text annotation | ||
| HL_6B4V_130 | No text annotation | ||
| HL_6B4V_141 | No text annotation | ||
| HL_6B4V_144 | No text annotation | ||
| HL_6B4V_161 | No text annotation | ||
| HL_6B4V_178 | No text annotation | ||
| HL_6B4V_185 | No text annotation | ||
| HL_6B4V_200 | GNRA with extra cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6B4V_001 | 1/A/30:32, 1/A/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.2 | |
| IL_6B4V_002 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.2 | |
| IL_6B4V_003 | 1/A/47:52, 1/A/359:361 | No text annotation | homologous IL_4LFB_003 IL_32983.2 | |
| IL_6B4V_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.3 | |
| IL_6B4V_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_6B4V_006 | 1/A/67:69, 1/A/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.4 | |
| IL_6B4V_007 | 1/A/129A:131, 1/A/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.2 | |
| IL_6B4V_008 | 1/A/132:136, 1/A/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_6B4V_384 | 1/A/148:153, 1/A/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_6B4V_010 | 1/A/186A:186C, 1/A/191E:191G | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.4 | |
| IL_6B4V_011 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_6B4V_012 | 1/A/249:252, 1/A/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_6B4V_013 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6B4V_385 | 1/A/367:369, 1/A/392:393 | Single bulged U | geometric IL_8P9A_396 IL_97561.5 | |
| IL_6B4V_014 | 1/A/371:375, 1/A/389:390 | C-loop | homologous IL_6CZR_127 NA | |
| IL_6B4V_337 | 1/A/409:416, 1/A/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_6B4V_017 | 1/A/446:450, 1/A/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_6B4V_018 | 1/A/450:455, 1/A/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_6B4V_019 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_6B4V_386 | 1/A/515:521, 1/A/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
| IL_6B4V_021 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_6B4V_022 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_6B4V_023 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.8 | |
| IL_6B4V_024 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.2 | |
| IL_6B4V_025 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_6B4V_026 | 1/A/657:658, 1/A/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.8 | |
| IL_6B4V_027 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.2 | |
| IL_6B4V_339 | 1/A/673:677, 1/A/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_6B4V_029 | 1/A/683:688, 1/A/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_6B4V_030 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_6B4V_031 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_6B4V_032 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_6B4V_033 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.2 | |
| IL_6B4V_034 | 1/A/925:927, 1/A/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_6B4V_341 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_6B4V_036 | 1/A/953:954, 1/A/1226:1228 | Minor groove platform | homologous IL_5J7L_042 NA | |
| IL_6B4V_037 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_61370.1 | |
| IL_6B4V_387 | 1/A/1000:1010, 1/A/1019:1040 | No text annotation | ||
| IL_6B4V_038 | 1/A/1047:1050, 1/A/1208:1210 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.4 | |
| IL_6B4V_388 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_6B4V_389 | 1/A/1052:1058, 1/A/1199:1206 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_6B4V_345 | 1/A/1056:1058, 1/A/1199:1204 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_6B4V_040 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_6B4V_041 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_6B4V_042 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.4 | |
| IL_6B4V_043 | 1/A/1122:1128, 1/A/1144:1151 | No text annotation | ||
| IL_6B4V_044 | 1/A/1158:1163, 1/A/1173:1181 | No text annotation | ||
| IL_6B4V_045 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_6B4V_046 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_6B4V_390 | 1/A/1259:1262, 1/A/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_58355.2 | |
| IL_6B4V_048 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.2 | |
| IL_6B4V_049 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6B4V_346 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_25873.2 | |
| IL_6B4V_347 | 1/A/1405:1407, 1/A/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_6B4V_348 | 1/A/1407:1409, 1/A/1491:1494 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_6B4V_052 | 1/A/1412:1414, 1/A/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_6B4V_053 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_6B4V_054 | 1/A/1431:1435, 1/A/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.7 | |
| IL_6B4V_055 | 1/A/1435:1437, 1/A/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_01003.4 | |
| IL_6B4V_056 | 1/A/1440:1447, 1/A/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_6B4V_057 | 1/B/24:30, 1/B/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_6B4V_058 | 1/B/36:37, 1/B/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6B4V_392 | 1/B/43:44, 1/B/434:436 | Minor groove platform | homologous IL_9DFE_348 IL_34520.3 | |
| IL_6B4V_060 | 1/B/81:85, 1/B/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6B4V_061 | 1/B/183:184, 1/B/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6B4V_062 | 1/B/188:194, 1/B/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_6B4V_063 | 1/B/239:245, 1/B/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6B4V_349 | 1/B/273:273, 1/B/363:364 | Major groove platform | homologous IL_9DFE_008 IL_48076.8 | |
| IL_6B4V_393 | 1/B/273E:278, 1/B/362:363C | No text annotation | ||
| IL_6B4V_067 | 1/B/280:284, 1/B/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6B4V_068 | 1/B/288:290, 1/B/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6B4V_069 | 1/B/293:295, 1/B/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6B4V_070 | 1/B/481:484, 1/B/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_6B4V_071 | 1/B/564:566, 1/B/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_6B4V_072 | 1/B/606:609B, 1/B/618B:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_6B4V_073 | 1/B/672:674, 1/B/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_6B4V_074 | 1/B/674:678, 1/B/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_6B4V_075 | 1/B/697:698, 1/B/763:765 | Single bulged A | geometric IL_7A0S_016 IL_14190.2 | |
| IL_6B4V_076 | 1/B/702:703, 1/B/728:730 | Single bulged G | homologous IL_4WF9_023 IL_28408.2 | |
| IL_6B4V_077 | 1/B/703:707, 1/B/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6B4V_078 | 1/B/738:741, 1/B/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6B4V_079 | 1/B/775:777, 1/B/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_6B4V_080 | 1/B/837:838, 1/B/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_6B4V_081 | 1/B/844:846, 1/B/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_6B4V_350 | 1/B/844:850, 1/B/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6B4V_082 | 1/B/846:850, 1/B/928:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_6B4V_083 | 1/B/858:862, 1/B/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_6B4V_084 | 1/B/862:863, 1/B/913:915 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_6B4V_394 | 1/B/864:868, 1/B/909:912 | C-loop with bulged stacked A's | homologous IL_9DFE_028 IL_16301.1 | |
| IL_6B4V_086 | 1/B/875:877, 1/B/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_6B4V_087 | 1/B/877:880, 1/B/897:899 | Minor groove platform with extra cWW | geometric IL_4V88_411 NA | |
| IL_6B4V_353 | 1/B/877:881, 1/B/895:899 | No text annotation | ||
| IL_6B4V_088 | 1/B/880:881, 1/B/895:897 | Single bulged A | geometric IL_4V88_409 NA | |
| IL_6B4V_089 | 1/B/952:954, 1/B/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6B4V_090 | 1/B/994:996, 1/B/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6B4V_091 | 1/B/998:1002, 1/B/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_6B4V_092 | 1/B/1004:1011, 1/B/1150:1151 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_11411.1 | |
| IL_6B4V_093 | 1/B/1011:1013, 1/B/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_6B4V_094 | 1/B/1018:1024, 1/B/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_6B4V_095 | 1/B/1024:1030, 1/B/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6B4V_096 | 1/B/1031:1034, 1/B/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6B4V_354 | 1/B/1041:1055, 1/B/1104:1114 | No text annotation | ||
| IL_6B4V_097 | 1/B/1196:1198, 1/B/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_6B4V_098 | 1/B/1202:1206, 1/B/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6B4V_099 | 1/B/1208:1215, 1/B/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6B4V_100 | 1/B/1219:1221, 1/B/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6B4V_101 | 1/B/1262:1269, 1/B/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6B4V_102 | 1/B/1319:1323, 1/B/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6B4V_103 | 1/B/1351:1355, 1/B/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6B4V_104 | 1/B/1357:1361, 1/B/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_05821.1 | |
| IL_6B4V_105 | 1/B/1415:1416, 1/B/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6B4V_106 | 1/B/1417:1421, 1/B/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_6B4V_107 | 1/B/1433:1435, 1/B/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_6B4V_108 | 1/B/1437:1440, 1/B/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6B4V_355 | 1/B/1448:1449, 1/B/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_90176.1 | |
| IL_6B4V_110 | 1/B/1450:1451, 1/B/1459:1461 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_6B4V_111 | 1/B/1469:1473, 1/B/1520:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_6B4V_112 | 1/B/1481:1483, 1/B/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_6B4V_113 | 1/B/1489:1491, 1/B/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6B4V_114 | 1/B/1526:1533, 1/B/1538:1546B | No text annotation | ||
| IL_6B4V_115 | 1/B/1651:1656, 1/B/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_6B4V_116 | 1/B/1663:1665, 1/B/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_6B4V_117 | 1/B/1666:1669, 1/B/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_6B4V_356 | 1/B/1666:1674, 1/B/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_6B4V_118 | 1/B/1669:1674, 1/B/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_6B4V_119 | 1/B/1686:1691, 1/B/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_6B4V_120 | 1/B/1770:1771, 1/B/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6B4V_121 | 1/B/1798:1804, 1/B/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6B4V_122 | 1/B/1837:1840, 1/B/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_6B4V_123 | 1/B/1841:1842, 1/B/1898:1901 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_6B4V_124 | 1/B/1846:1849, 1/B/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6B4V_125 | 1/B/1851:1855, 1/B/1887:1891 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_6B4V_126 | 1/B/1856:1860, 1/B/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6B4V_127 | 1/B/1933:1934, 1/B/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_6B4V_128 | 1/B/1934:1945, 1/B/1961:1964 | No text annotation | homologous IL_7RQB_077 NA | |
| IL_6B4V_129 | 1/B/2050:2052, 1/B/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6B4V_130 | 1/B/2054:2057, 1/B/2611:2615 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_6B4V_131 | 1/B/2067:2069, 1/B/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6B4V_132 | 1/B/2070:2071, 1/B/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6B4V_133 | 1/B/2081:2083, 1/B/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6B4V_134 | 1/B/2085:2087, 1/B/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.3 | |
| IL_6B4V_395 | 1/B/2108:2110, 1/B/2179:2181 | No text annotation | homologous IL_9DFE_084 NA | |
| IL_6B4V_136 | 1/B/2110:2120, 1/B/2178:2179 | No text annotation | geometric IL_3U4M_002 IL_32056.1 | |
| IL_6B4V_137 | 1/B/2122:2123, 1/B/2174:2176 | Single stack bend | geometric IL_4LFB_041 IL_15011.3 | |
| IL_6B4V_357 | 1/B/2122:2129, 1/B/2159:2176 | No text annotation | ||
| IL_6B4V_138 | 1/B/2123:2129, 1/B/2159:2174 | No text annotation | ||
| IL_6B4V_140 | 1/B/2350:2353, 1/B/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6B4V_141 | 1/B/2401:2403, 1/B/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_6B4V_142 | 1/B/2453:2454, 1/B/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_15011.3 | |
| IL_6B4V_143 | 1/B/2454:2455, 1/B/2496:2498 | Major groove platform | geometric IL_4V9F_082 IL_48076.8 | |
| IL_6B4V_144 | 1/B/2457:2459, 1/B/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.8 | |
| IL_6B4V_145 | 1/B/2459:2461, 1/B/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_4WF9_092 IL_36931.2 | |
| IL_6B4V_146 | 1/B/2466:2470, 1/B/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_6B4V_147 | 1/B/2507:2508, 1/B/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6B4V_148 | 1/B/2510:2512, 1/B/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_6B4V_149 | 1/B/2512:2513, 1/B/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_6B4V_150 | 1/B/2522:2523, 1/B/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_6B4V_152 | 1/B/2591:2592, 1/B/2601:2603 | Single bulged A | geometric IL_4V9F_090 IL_73464.1 | |
| IL_6B4V_153 | 1/B/2636:2640, 1/B/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6B4V_154 | 1/B/2652:2658, 1/B/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_6B4V_155 | 1/B/2680:2684, 1/B/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6B4V_156 | 1/B/2687:2691, 1/B/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_6B4V_157 | 1/B/2695:2696, 1/B/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6B4V_158 | 1/B/2737:2742, 1/B/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6B4V_159 | 1/B/2789:2811, 1/B/2889:2894 | No text annotation | ||
| IL_6B4V_160 | 1/B/2838:2839, 1/B/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6B4V_360 | 1/B/2843:2845, 1/B/2871:2874 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_6B4V_162 | 1/B/2847:2852, 1/B/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6B4V_163 | 1/C/17:18, 1/C/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_6B4V_164 | 1/C/23:28, 1/C/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_6B4V_165 | 1/C/30:31, 1/C/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_6B4V_166 | 1/C/34:38, 1/C/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6B4V_167 | 1/C/71:79, 1/C/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_6B4V_168 | 1/EB/30:32, 1/EB/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.2 | |
| IL_6B4V_169 | 1/EB/44:45, 1/EB/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.2 | |
| IL_6B4V_170 | 1/EB/47:52, 1/EB/359:361 | No text annotation | homologous IL_4LFB_003 IL_32983.2 | |
| IL_6B4V_171 | 1/EB/54:56, 1/EB/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.3 | |
| IL_6B4V_172 | 1/EB/63:66, 1/EB/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_6B4V_173 | 1/EB/67:69, 1/EB/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.4 | |
| IL_6B4V_174 | 1/EB/129A:131, 1/EB/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.2 | |
| IL_6B4V_175 | 1/EB/132:136, 1/EB/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_6B4V_396 | 1/EB/148:153, 1/EB/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_6B4V_177 | 1/EB/186A:186C, 1/EB/191E:191G | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.4 | |
| IL_6B4V_178 | 1/EB/242:247, 1/EB/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_6B4V_179 | 1/EB/249:252, 1/EB/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_6B4V_180 | 1/EB/292:293, 1/EB/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6B4V_397 | 1/EB/367:369, 1/EB/392:393 | Single bulged U | geometric IL_8P9A_396 IL_97561.5 | |
| IL_6B4V_181 | 1/EB/371:375, 1/EB/389:390 | C-loop | homologous IL_6CZR_127 NA | |
| IL_6B4V_361 | 1/EB/375:376, 1/EB/387:389 | Single bulged G | homologous IL_4LFB_016 IL_28408.2 | |
| IL_6B4V_362 | 1/EB/409:416, 1/EB/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_6B4V_184 | 1/EB/446:450, 1/EB/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_6B4V_185 | 1/EB/450:455, 1/EB/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_6B4V_186 | 1/EB/504:511, 1/EB/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_6B4V_398 | 1/EB/515:521, 1/EB/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
| IL_6B4V_188 | 1/EB/569:575, 1/EB/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_6B4V_189 | 1/EB/580:584, 1/EB/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_6B4V_190 | 1/EB/594:596, 1/EB/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.8 | |
| IL_6B4V_191 | 1/EB/597:598, 1/EB/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.2 | |
| IL_6B4V_192 | 1/EB/605:612, 1/EB/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_6B4V_193 | 1/EB/657:658, 1/EB/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.8 | |
| IL_6B4V_194 | 1/EB/662:666, 1/EB/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.2 | |
| IL_6B4V_364 | 1/EB/673:677, 1/EB/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_6B4V_196 | 1/EB/683:688, 1/EB/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_6B4V_197 | 1/EB/774:778, 1/EB/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_6B4V_198 | 1/EB/779:783, 1/EB/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_6B4V_199 | 1/EB/887:894, 1/EB/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_6B4V_200 | 1/EB/922:923, 1/EB/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.2 | |
| IL_6B4V_201 | 1/EB/925:927, 1/EB/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_6B4V_399 | 1/EB/933:935, 1/EB/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_6B4V_203 | 1/EB/953:954, 1/EB/1226:1228 | Minor groove platform | homologous IL_5J7L_042 NA | |
| IL_6B4V_204 | 1/EB/993:997, 1/EB/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_61370.1 | |
| IL_6B4V_400 | 1/EB/1000:1010, 1/EB/1019:1040 | No text annotation | ||
| IL_6B4V_205 | 1/EB/1047:1050, 1/EB/1208:1210 | Self complementary | geometric IL_2D6F_001 NA | |
| IL_6B4V_401 | 1/EB/1052:1056, 1/EB/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_6B4V_402 | 1/EB/1052:1058, 1/EB/1199:1206 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_6B4V_369 | 1/EB/1056:1058, 1/EB/1199:1204 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_6B4V_207 | 1/EB/1057:1058, 1/EB/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_6B4V_208 | 1/EB/1060:1061, 1/EB/1195:1197 | Single bulged U | geometric IL_4V9F_039 IL_97561.5 | |
| IL_6B4V_209 | 1/EB/1061:1063, 1/EB/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.4 | |
| IL_6B4V_210 | 1/EB/1122:1128, 1/EB/1144:1151 | No text annotation | ||
| IL_6B4V_211 | 1/EB/1158:1163, 1/EB/1173:1181 | No text annotation | ||
| IL_6B4V_212 | 1/EB/1247:1253, 1/EB/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_6B4V_213 | 1/EB/1255:1258, 1/EB/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_6B4V_403 | 1/EB/1259:1262, 1/EB/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_58355.2 | |
| IL_6B4V_215 | 1/EB/1303:1308, 1/EB/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_57885.2 | |
| IL_6B4V_216 | 1/EB/1399:1401, 1/EB/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6B4V_370 | 1/EB/1401:1404, 1/EB/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_25873.2 | |
| IL_6B4V_371 | 1/EB/1405:1407, 1/EB/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_6B4V_372 | 1/EB/1407:1409, 1/EB/1491:1494 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_6B4V_219 | 1/EB/1412:1414, 1/EB/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_6B4V_220 | 1/EB/1416:1419, 1/EB/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_6B4V_221 | 1/EB/1431:1435, 1/EB/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.7 | |
| IL_6B4V_222 | 1/EB/1435:1437, 1/EB/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_01003.4 | |
| IL_6B4V_223 | 1/EB/1440:1447, 1/EB/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_6B4V_224 | 1/FB/24:30, 1/FB/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_6B4V_225 | 1/FB/36:37, 1/FB/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6B4V_405 | 1/FB/43:44, 1/FB/434:436 | Minor groove platform | homologous IL_9DFE_348 IL_34520.3 | |
| IL_6B4V_227 | 1/FB/81:85, 1/FB/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6B4V_228 | 1/FB/183:184, 1/FB/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6B4V_229 | 1/FB/188:194, 1/FB/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_6B4V_230 | 1/FB/239:245, 1/FB/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6B4V_373 | 1/FB/273:273, 1/FB/363:364 | Major groove platform | homologous IL_9DFE_008 IL_48076.8 | |
| IL_6B4V_406 | 1/FB/273E:278, 1/FB/362:363C | No text annotation | ||
| IL_6B4V_234 | 1/FB/280:284, 1/FB/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6B4V_235 | 1/FB/288:290, 1/FB/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6B4V_236 | 1/FB/293:295, 1/FB/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6B4V_237 | 1/FB/481:484, 1/FB/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_6B4V_238 | 1/FB/564:566, 1/FB/575:577 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_6B4V_239 | 1/FB/606:609B, 1/FB/618B:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_6B4V_240 | 1/FB/672:674, 1/FB/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6B4V_241 | 1/FB/674:678, 1/FB/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_6B4V_242 | 1/FB/697:698, 1/FB/763:765 | Single bulged A | geometric IL_7A0S_016 IL_14190.2 | |
| IL_6B4V_243 | 1/FB/702:703, 1/FB/728:730 | Single bulged G | geometric IL_4WF9_023 IL_28408.2 | |
| IL_6B4V_244 | 1/FB/703:707, 1/FB/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_6B4V_245 | 1/FB/738:741, 1/FB/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6B4V_246 | 1/FB/775:777, 1/FB/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_6B4V_247 | 1/FB/837:838, 1/FB/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_6B4V_248 | 1/FB/844:846, 1/FB/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_6B4V_374 | 1/FB/844:850, 1/FB/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6B4V_249 | 1/FB/846:850, 1/FB/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_6B4V_250 | 1/FB/858:862, 1/FB/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_6B4V_251 | 1/FB/862:863, 1/FB/913:915 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_6B4V_407 | 1/FB/864:868, 1/FB/909:912 | C-loop with bulged stacked A's | homologous IL_9DFE_028 IL_16301.1 | |
| IL_6B4V_253 | 1/FB/875:877, 1/FB/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_6B4V_254 | 1/FB/877:880, 1/FB/897:899 | Minor groove platform with extra cWW | geometric IL_4V88_411 NA | |
| IL_6B4V_377 | 1/FB/877:881, 1/FB/895:899 | No text annotation | ||
| IL_6B4V_255 | 1/FB/880:881, 1/FB/895:897 | Single bulged A | geometric IL_4V88_409 NA | |
| IL_6B4V_256 | 1/FB/952:954, 1/FB/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6B4V_257 | 1/FB/994:996, 1/FB/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6B4V_258 | 1/FB/998:1002, 1/FB/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_6B4V_259 | 1/FB/1004:1011, 1/FB/1150:1151 | SSU/LSU pseudoknot | geometric IL_4WF9_037 IL_11411.1 | |
| IL_6B4V_260 | 1/FB/1011:1013, 1/FB/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_6B4V_261 | 1/FB/1018:1024, 1/FB/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_6B4V_262 | 1/FB/1024:1030, 1/FB/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6B4V_263 | 1/FB/1031:1034, 1/FB/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6B4V_378 | 1/FB/1041:1055, 1/FB/1104:1114 | No text annotation | ||
| IL_6B4V_264 | 1/FB/1196:1198, 1/FB/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_6B4V_265 | 1/FB/1202:1206, 1/FB/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6B4V_266 | 1/FB/1208:1215, 1/FB/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6B4V_267 | 1/FB/1219:1221, 1/FB/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6B4V_268 | 1/FB/1262:1269, 1/FB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6B4V_269 | 1/FB/1310:1313, 1/FB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6B4V_270 | 1/FB/1319:1323, 1/FB/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6B4V_271 | 1/FB/1351:1355, 1/FB/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6B4V_272 | 1/FB/1357:1361, 1/FB/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_05821.1 | |
| IL_6B4V_273 | 1/FB/1415:1416, 1/FB/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6B4V_274 | 1/FB/1417:1421, 1/FB/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_6B4V_275 | 1/FB/1433:1435, 1/FB/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_6B4V_276 | 1/FB/1437:1440, 1/FB/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6B4V_379 | 1/FB/1448:1449, 1/FB/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_90176.1 | |
| IL_6B4V_278 | 1/FB/1450:1451, 1/FB/1459:1461 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_6B4V_279 | 1/FB/1469:1473, 1/FB/1520:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_6B4V_280 | 1/FB/1481:1483, 1/FB/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_6B4V_281 | 1/FB/1489:1491, 1/FB/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6B4V_282 | 1/FB/1526:1533, 1/FB/1538:1546B | No text annotation | ||
| IL_6B4V_283 | 1/FB/1651:1656, 1/FB/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_6B4V_284 | 1/FB/1663:1665, 1/FB/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_6B4V_285 | 1/FB/1666:1669, 1/FB/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_6B4V_380 | 1/FB/1666:1674, 1/FB/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_6B4V_286 | 1/FB/1669:1674, 1/FB/1990:1993 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.1 | |
| IL_6B4V_287 | 1/FB/1686:1691, 1/FB/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_6B4V_288 | 1/FB/1770:1771, 1/FB/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6B4V_289 | 1/FB/1798:1804, 1/FB/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6B4V_290 | 1/FB/1837:1840, 1/FB/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_6B4V_291 | 1/FB/1841:1842, 1/FB/1898:1901 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_6B4V_292 | 1/FB/1846:1849, 1/FB/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6B4V_293 | 1/FB/1851:1855, 1/FB/1887:1891 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_6B4V_294 | 1/FB/1856:1860, 1/FB/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6B4V_295 | 1/FB/1933:1934, 1/FB/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_6B4V_296 | 1/FB/1934:1945, 1/FB/1961:1964 | No text annotation | geometric IL_4V9F_071 IL_04332.3 | |
| IL_6B4V_297 | 1/FB/2050:2052, 1/FB/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6B4V_298 | 1/FB/2054:2057, 1/FB/2611:2615 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_6B4V_299 | 1/FB/2067:2069, 1/FB/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6B4V_300 | 1/FB/2070:2071, 1/FB/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6B4V_301 | 1/FB/2081:2083, 1/FB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6B4V_302 | 1/FB/2085:2087, 1/FB/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.3 | |
| IL_6B4V_408 | 1/FB/2108:2110, 1/FB/2179:2181 | No text annotation | homologous IL_9DFE_084 NA | |
| IL_6B4V_304 | 1/FB/2110:2120, 1/FB/2178:2179 | No text annotation | geometric IL_3U4M_002 IL_32056.1 | |
| IL_6B4V_305 | 1/FB/2122:2123, 1/FB/2174:2176 | Single stack bend | geometric IL_4LFB_041 IL_15011.3 | |
| IL_6B4V_381 | 1/FB/2122:2129, 1/FB/2159:2176 | No text annotation | ||
| IL_6B4V_306 | 1/FB/2123:2129, 1/FB/2159:2174 | No text annotation | ||
| IL_6B4V_307 | 1/FB/2129:2139, 1/FB/2152:2159 | No text annotation | ||
| IL_6B4V_308 | 1/FB/2350:2353, 1/FB/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6B4V_309 | 1/FB/2401:2403, 1/FB/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_6B4V_310 | 1/FB/2453:2454, 1/FB/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_15011.3 | |
| IL_6B4V_311 | 1/FB/2454:2455, 1/FB/2496:2498 | Major groove platform | geometric IL_4V9F_082 IL_48076.8 | |
| IL_6B4V_312 | 1/FB/2457:2459, 1/FB/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.8 | |
| IL_6B4V_313 | 1/FB/2459:2461, 1/FB/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_4WF9_092 IL_36931.2 | |
| IL_6B4V_314 | 1/FB/2466:2470, 1/FB/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_6B4V_315 | 1/FB/2507:2508, 1/FB/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6B4V_316 | 1/FB/2510:2512, 1/FB/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_6B4V_317 | 1/FB/2512:2513, 1/FB/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_6B4V_318 | 1/FB/2522:2523, 1/FB/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_6B4V_320 | 1/FB/2591:2592, 1/FB/2601:2603 | Single bulged A | geometric IL_4V9F_090 IL_73464.1 | |
| IL_6B4V_321 | 1/FB/2636:2640, 1/FB/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6B4V_322 | 1/FB/2652:2658, 1/FB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_6B4V_323 | 1/FB/2680:2684, 1/FB/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6B4V_324 | 1/FB/2687:2691, 1/FB/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_6B4V_325 | 1/FB/2695:2696, 1/FB/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6B4V_326 | 1/FB/2737:2742, 1/FB/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6B4V_327 | 1/FB/2789:2811, 1/FB/2889:2894 | No text annotation | ||
| IL_6B4V_328 | 1/FB/2838:2839, 1/FB/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6B4V_383 | 1/FB/2843:2845, 1/FB/2871:2874 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_6B4V_330 | 1/FB/2847:2852, 1/FB/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6B4V_331 | 1/GB/17:18, 1/GB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_6B4V_332 | 1/GB/23:28, 1/GB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_6B4V_333 | 1/GB/30:31, 1/GB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_6B4V_334 | 1/GB/34:38, 1/GB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6B4V_335 | 1/GB/71:79, 1/GB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6B4V_009 | No text annotation | ||
| IL_6B4V_336 | Single bulged G | ||
| IL_6B4V_015 | Single bulged G, near cWW | ||
| IL_6B4V_016 | No text annotation | ||
| IL_6B4V_020 | No text annotation | ||
| IL_6B4V_338 | Partly complementary | ||
| IL_6B4V_028 | No text annotation | ||
| IL_6B4V_340 | Isolated non-canonical cWW pair | ||
| IL_6B4V_035 | No text annotation | ||
| IL_6B4V_342 | No text annotation | ||
| IL_6B4V_039 | No text annotation | ||
| IL_6B4V_343 | No text annotation | ||
| IL_6B4V_344 | No text annotation | ||
| IL_6B4V_047 | Double sheared with non-canonical cWW | ||
| IL_6B4V_050 | No text annotation | ||
| IL_6B4V_051 | No text annotation | ||
| IL_6B4V_391 | Isolated non-canonical cWW pair | ||
| IL_6B4V_059 | No text annotation | ||
| IL_6B4V_064 | No text annotation | ||
| IL_6B4V_065 | No text annotation | ||
| IL_6B4V_066 | No text annotation | ||
| IL_6B4V_351 | No text annotation | ||
| IL_6B4V_085 | No text annotation | ||
| IL_6B4V_352 | No text annotation | ||
| IL_6B4V_109 | Multiple bulged bases | ||
| IL_6B4V_135 | Self complementary | ||
| IL_6B4V_139 | No text annotation | ||
| IL_6B4V_358 | No text annotation | ||
| IL_6B4V_151 | No text annotation | ||
| IL_6B4V_359 | Other IL | ||
| IL_6B4V_161 | No text annotation | ||
| IL_6B4V_176 | No text annotation | ||
| IL_6B4V_182 | Single bulged G, near cWW | ||
| IL_6B4V_183 | No text annotation | ||
| IL_6B4V_187 | No text annotation | ||
| IL_6B4V_363 | Partly complementary | ||
| IL_6B4V_195 | No text annotation | ||
| IL_6B4V_365 | Isolated non-canonical cWW pair | ||
| IL_6B4V_202 | No text annotation | ||
| IL_6B4V_366 | No text annotation | ||
| IL_6B4V_206 | No text annotation | ||
| IL_6B4V_367 | No text annotation | ||
| IL_6B4V_368 | No text annotation | ||
| IL_6B4V_214 | Double sheared with non-canonical cWW | ||
| IL_6B4V_217 | No text annotation | ||
| IL_6B4V_218 | No text annotation | ||
| IL_6B4V_404 | Isolated non-canonical cWW pair | ||
| IL_6B4V_226 | No text annotation | ||
| IL_6B4V_231 | No text annotation | ||
| IL_6B4V_232 | No text annotation | ||
| IL_6B4V_233 | No text annotation | ||
| IL_6B4V_375 | No text annotation | ||
| IL_6B4V_252 | No text annotation | ||
| IL_6B4V_376 | No text annotation | ||
| IL_6B4V_277 | Multiple bulged bases | ||
| IL_6B4V_303 | Self complementary | ||
| IL_6B4V_382 | No text annotation | ||
| IL_6B4V_319 | No text annotation | ||
| IL_6B4V_329 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6B4V_076 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | geometric J3_4LFB_010 J3_58657.1 | |
| J3_6B4V_077 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_6B4V_050 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_6CZR_077 NA | |
| J3_6B4V_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_6B4V_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_6B4V_051 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_6B4V_005 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_6B4V_006 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_6B4V_007 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_6B4V_078 | 1/A/990:997, 1/A/1044:1047, 1/A/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_6B4V_008 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_6B4V_079 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_6B4V_010 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_6B4V_054 | 1/A/1116:1118, 1/A/1155:1163, 1/A/1173:1184 | No text annotation | ||
| J3_6B4V_011 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation | homologous J3_5J7L_011 NA | |
| J3_6B4V_012 | 1/B/30:31, 1/B/474:481, 1/B/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6B4V_055 | 1/B/30:31, 1/B/474:484, 1/B/496:510 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_6B4V_056 | 1/B/32:35, 1/B/445:461, 1/B/468:473 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_6B4V_013 | 1/B/56:57, 1/B/70:76, 1/B/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6B4V_057 | 1/B/269:270, 1/B/270:271, 1/B/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_6B4V_058 | 1/B/297:301, 1/B/316:325, 1/B/337:341 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_6B4V_015 | 1/B/683:689, 1/B/773:775, 1/B/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_6B4V_016 | 1/B/698:700, 1/B/732:736, 1/B/760:763 | No text annotation | homologous J3_5J7L_039 NA | |
| J3_6B4V_017 | 1/B/1298:1303, 1/B/1625:1627, 1/B/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6B4V_018 | 1/B/1306:1309, 1/B/1605:1611, 1/B/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6B4V_019 | 1/B/1344:1350, 1/B/1381:1385, 1/B/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6B4V_059 | 1/B/1424:1429, 1/B/1564:1565, 1/B/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_6B4V_020 | 1/B/2091:2093, 1/B/2196:2205, 1/B/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6B4V_060 | 1/B/2282:2284, 1/B/2384:2395, 1/B/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_6B4V_021 | 1/B/2295:2299, 1/B/2317:2323, 1/B/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_6B4V_022 | 1/B/2517:2520, 1/B/2545:2547, 1/B/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6B4V_023 | 1/B/2814:2815, 1/B/2831:2836, 1/B/2882:2886 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_6B4V_061 | 1/C/11:16, 1/C/68:69, 1/C/107:109 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_6B4V_080 | 1/D/5:27, 1/D/43:49, 1/D/65:68 | No text annotation | ||
| J3_6B4V_081 | 1/EB/46:47, 1/EB/361:367, 1/EB/393:395 | No text annotation | geometric J3_4LFB_010 J3_58657.1 | |
| J3_6B4V_082 | 1/EB/46:52, 1/EB/359:367, 1/EB/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_6B4V_064 | 1/EB/586:588, 1/EB/651:655, 1/EB/751:755 | No text annotation | homologous J3_6CZR_077 NA | |
| J3_6B4V_027 | 1/EB/672:673, 1/EB/717:725, 1/EB/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_6B4V_028 | 1/EB/826:829, 1/EB/857:861, 1/EB/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_6B4V_065 | 1/EB/936:939, 1/EB/1344:1350, 1/EB/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_6B4V_029 | 1/EB/943:946, 1/EB/1235:1237, 1/EB/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_6B4V_030 | 1/EB/955:962, 1/EB/973:984, 1/EB/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_6B4V_031 | 1/EB/990:993, 1/EB/1045:1047, 1/EB/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_6B4V_083 | 1/EB/990:997, 1/EB/1044:1047, 1/EB/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_6B4V_032 | 1/EB/1063:1068, 1/EB/1107:1113, 1/EB/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_6B4V_084 | 1/EB/1073:1074, 1/EB/1083:1086, 1/EB/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_6B4V_034 | 1/EB/1116:1118, 1/EB/1155:1158, 1/EB/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_6B4V_068 | 1/EB/1116:1118, 1/EB/1155:1163, 1/EB/1173:1184 | No text annotation | ||
| J3_6B4V_035 | 1/EB/1237:1241, 1/EB/1296:1303, 1/EB/1334:1337 | No text annotation | homologous J3_5J7L_011 NA | |
| J3_6B4V_036 | 1/FB/30:31, 1/FB/474:481, 1/FB/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6B4V_069 | 1/FB/30:31, 1/FB/474:484, 1/FB/496:510 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_6B4V_070 | 1/FB/32:35, 1/FB/445:461, 1/FB/468:473 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_6B4V_037 | 1/FB/56:57, 1/FB/70:76, 1/FB/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6B4V_071 | 1/FB/269:270, 1/FB/270:271, 1/FB/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_6B4V_072 | 1/FB/297:301, 1/FB/316:325, 1/FB/337:341 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_6B4V_039 | 1/FB/683:689, 1/FB/773:775, 1/FB/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_6B4V_040 | 1/FB/698:700, 1/FB/732:736, 1/FB/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6B4V_041 | 1/FB/1298:1303, 1/FB/1625:1627, 1/FB/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6B4V_042 | 1/FB/1306:1309, 1/FB/1605:1611, 1/FB/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6B4V_043 | 1/FB/1344:1350, 1/FB/1381:1385, 1/FB/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6B4V_073 | 1/FB/1424:1429, 1/FB/1564:1565, 1/FB/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_6B4V_044 | 1/FB/2091:2093, 1/FB/2196:2205, 1/FB/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6B4V_074 | 1/FB/2282:2284, 1/FB/2384:2395, 1/FB/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_6B4V_045 | 1/FB/2295:2299, 1/FB/2317:2323, 1/FB/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_6B4V_046 | 1/FB/2517:2520, 1/FB/2545:2547, 1/FB/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6B4V_047 | 1/FB/2814:2815, 1/FB/2831:2836, 1/FB/2882:2886 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_6B4V_085 | 1/GB/11:16, 1/GB/68:69, 1/GB/107:109 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_6B4V_086 | 1/HB/5:27, 1/HB/43:49, 1/HB/65:68 | No text annotation | ||
| J4_6B4V_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_6B4V_002 | 1/A/142:144, 1/A/178:183, 1/A/194:198, 1/A/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6B4V_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_6B4V_004 | 1/B/268:269, 1/B/370:375, 1/B/399:406, 1/B/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_6B4V_005 | 1/B/601:604, 1/B/624:628, 1/B/635:638, 1/B/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6B4V_006 | 1/B/1270:1276, 1/B/1294:1295, 1/B/1645:1648, 1/B/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_6B4V_029 | 1/B/1310:1314, 1/B/1338:1343, 1/B/1404:1405, 1/B/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_6B4V_008 | 1/B/1444:1445, 1/B/1466:1467, 1/B/1525:1526, 1/B/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_6B4V_009 | 1/B/1674:1682, 1/B/1706:1707, 1/B/1751:1764, 1/B/1988:1990 | No text annotation | ||
| J4_6B4V_010 | 1/B/1772:1776, 1/B/1788:1792, 1/B/1827:1830, 1/B/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_6B4V_030 | 1/B/1833:1835, 1/B/1905:1906, 1/B/1924:1933, 1/B/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6B4V_012 | 1/B/2285:2289, 1/B/2343:2347, 1/B/2370:2372, 1/B/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_98139.1 | |
| J4_6B4V_031 | 1/B/2643:2646, 1/B/2674:2676, 1/B/2731:2735, 1/B/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_6B4V_014 | 1/EB/115:122, 1/EB/239:240, 1/EB/286:289, 1/EB/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_6B4V_015 | 1/EB/142:144, 1/EB/178:183, 1/EB/194:198, 1/EB/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6B4V_016 | 1/EB/569:577, 1/EB/764:769, 1/EB/810:821, 1/EB/879:881 | No text annotation | ||
| J4_6B4V_017 | 1/FB/268:269, 1/FB/370:375, 1/FB/399:406, 1/FB/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_6B4V_018 | 1/FB/601:604, 1/FB/624:628, 1/FB/635:638, 1/FB/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6B4V_019 | 1/FB/1270:1276, 1/FB/1294:1295, 1/FB/1645:1648, 1/FB/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_6B4V_032 | 1/FB/1310:1314, 1/FB/1338:1343, 1/FB/1404:1405, 1/FB/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_6B4V_033 | 1/FB/1444:1445, 1/FB/1466:1467, 1/FB/1525:1526, 1/FB/1546B:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_6B4V_022 | 1/FB/1674:1682, 1/FB/1706:1707, 1/FB/1751:1764, 1/FB/1988:1990 | No text annotation | ||
| J4_6B4V_023 | 1/FB/1772:1776, 1/FB/1788:1792, 1/FB/1827:1830, 1/FB/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_6B4V_034 | 1/FB/1833:1835, 1/FB/1905:1906, 1/FB/1924:1933, 1/FB/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6B4V_025 | 1/FB/2285:2289, 1/FB/2343:2347, 1/FB/2370:2372, 1/FB/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_98139.1 | |
| J4_6B4V_035 | 1/FB/2643:2646, 1/FB/2674:2676, 1/FB/2731:2735, 1/FB/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_6B4V_027 | 1/IA/7:10, 1/IA/25:27, 1/IA/43:49, 1/IA/65:66 | tRNA junction | homologous J4_9DFC_015 NA | |
| J4_6B4V_028 | 1/MC/7:10, 1/MC/25:27, 1/MC/43:49, 1/MC/65:66 | tRNA junction | homologous J4_9DFC_015 NA | |
| J5_6B4V_001 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6B4V_002 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_6B4V_003 | 1/B/47:54, 1/B/116:121, 1/B/130:131, 1/B/148:150, 1/B/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_6B4V_004 | 1/B/268:270, 1/B/270:271, 1/B/366:375, 1/B/399:406, 1/B/421:424 | No text annotation | ||
| J5_6B4V_005 | 1/B/531:533, 1/B/560:564, 1/B/577:579, 1/B/1261:1262, 1/B/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_6B4V_006 | 1/B/584:589, 1/B/668:671, 1/B/809:812, 1/B/1195:1196, 1/B/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_6B4V_007 | 1/B/2057:2064, 1/B/2446:2453, 1/B/2500:2507, 1/B/2582:2588, 1/B/2606:2611 | No text annotation | ||
| J5_6B4V_008 | 1/B/2074:2077, 1/B/2243:2246, 1/B/2258:2259, 1/B/2281:2282, 1/B/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J5_6B4V_009 | 1/EB/36:39, 1/EB/403:406, 1/EB/436:442, 1/EB/492:500, 1/EB/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6B4V_010 | 1/EB/58:61, 1/EB/106:113, 1/EB/314:316, 1/EB/337:339, 1/EB/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_6B4V_011 | 1/FB/47:54, 1/FB/116:121, 1/FB/130:131, 1/FB/148:150, 1/FB/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_6B4V_012 | 1/FB/268:270, 1/FB/270:271, 1/FB/366:375, 1/FB/399:406, 1/FB/421:424 | No text annotation | ||
| J5_6B4V_013 | 1/FB/531:533, 1/FB/560:564, 1/FB/577:579, 1/FB/1261:1262, 1/FB/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_6B4V_014 | 1/FB/584:589, 1/FB/668:671, 1/FB/809:812, 1/FB/1195:1196, 1/FB/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_6B4V_015 | 1/FB/2057:2064, 1/FB/2446:2453, 1/FB/2500:2507, 1/FB/2582:2588, 1/FB/2606:2611 | No text annotation | ||
| J5_6B4V_016 | 1/FB/2074:2077, 1/FB/2243:2246, 1/FB/2258:2259, 1/FB/2281:2282, 1/FB/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_6B4V_001 | 1/B/45:46, 1/B/179:183, 1/B/214:224, 1/B/231:235, 1/B/262:266, 1/B/426:433 | No text annotation | ||
| J6_6B4V_002 | 1/B/2074:2077, 1/B/2243:2246, 1/B/2258:2259, 1/B/2281:2284, 1/B/2384:2395, 1/B/2421:2435 | No text annotation | ||
| J6_6B4V_003 | 1/FB/45:46, 1/FB/179:183, 1/FB/214:224, 1/FB/231:235, 1/FB/262:266, 1/FB/426:433 | No text annotation | ||
| J6_6B4V_004 | 1/FB/2074:2077, 1/FB/2243:2246, 1/FB/2258:2259, 1/FB/2281:2284, 1/FB/2384:2395, 1/FB/2421:2435 | No text annotation | ||
| J7_6B4V_001 | 1/B/8:15, 1/B/525:531, 1/B/2018:2023, 1/B/2040:2043, 1/B/2625:2630, 1/B/2788:2789, 1/B/2894:2895 | No text annotation | ||
| J7_6B4V_002 | 1/B/817:822, 1/B/835:836, 1/B/943:946, 1/B/971:976, 1/B/987:991, 1/B/1163:1164, 1/B/1185:1190 | No text annotation | ||
| J7_6B4V_003 | 1/FB/8:15, 1/FB/525:531, 1/FB/2018:2023, 1/FB/2040:2043, 1/FB/2625:2630, 1/FB/2788:2789, 1/FB/2894:2895 | No text annotation | ||
| J7_6B4V_004 | 1/FB/817:822, 1/FB/835:836, 1/FB/943:946, 1/FB/971:976, 1/FB/987:991, 1/FB/1163:1164, 1/FB/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6B4V_001 | No text annotation | ||
| J3_6B4V_049 | No text annotation | ||
| J3_6B4V_002 | No text annotation | ||
| J3_6B4V_052 | No text annotation | ||
| J3_6B4V_053 | No text annotation | ||
| J3_6B4V_009 | No text annotation | ||
| J3_6B4V_014 | No text annotation | ||
| J3_6B4V_024 | No text annotation | ||
| J3_6B4V_062 | No text annotation | ||
| J3_6B4V_025 | No text annotation | ||
| J3_6B4V_063 | No text annotation | ||
| J3_6B4V_026 | No text annotation | ||
| J3_6B4V_066 | No text annotation | ||
| J3_6B4V_067 | No text annotation | ||
| J3_6B4V_033 | No text annotation | ||
| J3_6B4V_038 | No text annotation | ||
| J3_6B4V_048 | No text annotation | ||
| J3_6B4V_075 | No text annotation | ||
| J4_6B4V_007 | No text annotation | ||
| J4_6B4V_011 | No text annotation | ||
| J4_6B4V_013 | No text annotation | ||
| J4_6B4V_020 | No text annotation | ||
| J4_6B4V_021 | No text annotation | ||
| J4_6B4V_024 | No text annotation | ||
| J4_6B4V_026 | No text annotation |
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