HL_6B4V_007

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_007 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1094

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6B4V|1|A|U|296
6B4V|1|A|G|297
6B4V|1|A|A|298
6B4V|1|A|G|299
6B4V|1|A|A|300
6B4V|1|A|G|301

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain MA

30S ribosomal protein S4

Chain NA

30S ribosomal protein S5

Chain UA

30S ribosomal protein S12

Chain ZA

30S ribosomal protein S17