HL_6B4V_008
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CACUGAGACACGGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6B4V_008 not in the Motif Atlas
- Homologous match to HL_4LFB_008
- Geometric discrepancy: 0.1087
- The information below is about HL_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39665.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6B4V|1|A|C|320
6B4V|1|A|A|321
6B4V|1|A|C|322
6B4V|1|A|U|323
6B4V|1|A|G|324
6B4V|1|A|A|325
6B4V|1|A|G|326
6B4V|1|A|A|327
6B4V|1|A|C|328
6B4V|1|A|A|329
6B4V|1|A|C|330
6B4V|1|A|G|331
6B4V|1|A|G|332
6B4V|1|A|G|333
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain CB
- 30S ribosomal protein S20
- Chain YA
- 30S ribosomal protein S16
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