HL_6B4V_011

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6B4V|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_011 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1749

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

6B4V|1|A|C|419
6B4V|1|A|U|420
6B4V|1|A|U|421
6B4V|1|A|C|422
6B4V|1|A|G|423
6B4V|1|A|G|424

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain LA

30S ribosomal protein S3

Chain MA

30S ribosomal protein S4