HL_6B4V_025

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAGCGGUUCGGCCGG

Length

15 nucleotides

Bulged bases

6B4V|1|A|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|A|C|1129
6B4V|1|A|A|1130
6B4V|1|A|G|1131
6B4V|1|A|C|1132
6B4V|1|A|G|1133
6B4V|1|A|G|1134
6B4V|1|A|U|1135
6B4V|1|A|U|1136
6B4V|1|A|C|1137
6B4V|1|A|G|1138
6B4V|1|A|G|1139
6B4V|1|A|C|1140
6B4V|1|A|C|1141
6B4V|1|A|G|1142
6B4V|1|A|G|1143

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain RA

30S ribosomal protein S9