HL_6B4V_039
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6B4V_039 not in the Motif Atlas
- Homologous match to HL_5J7L_141
- Geometric discrepancy: 0.0941
- The information below is about HL_5J7L_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37369.2
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6B4V|1|B|C|246
6B4V|1|B|G|247
6B4V|1|B|G|248
6B4V|1|B|C|249
6B4V|1|B|G|250
6B4V|1|B|A|251
6B4V|1|B|G|252
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain D
- Transfer RNA; tRNA
- Chain FA
- 50S ribosomal protein L35
- Chain M
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L28
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