HL_6B4V_047

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_047 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.241

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6B4V|1|B|C|544
6B4V|1|B|G|545
6B4V|1|B|C|546
6B4V|1|B|A|547
6B4V|1|B|A|548
6B4V|1|B|G|549

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain S

50S ribosomal protein L21