HL_6B4V_070

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6B4V|1|B|A|1614, 6B4V|1|B|A|1616, 6B4V|1|B|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_070 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0972

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6B4V|1|B|C|1612
6B4V|1|B|G|1613
6B4V|1|B|A|1614
6B4V|1|B|C|1615
6B4V|1|B|A|1616
6B4V|1|B|C|1617
6B4V|1|B|A|1618
6B4V|1|B|G|1619

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain EA

50S ribosomal protein L34

Chain T

50S ribosomal protein L22