HL_6B4V_078

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6B4V|1|B|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_078 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1102

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6B4V|1|B|G|1949
6B4V|1|B|G|1950
6B4V|1|B|U|1951
6B4V|1|B|A|1952
6B4V|1|B|A|1953
6B4V|1|B|G|1954
6B4V|1|B|U|1955
6B4V|1|B|U|1956
6B4V|1|B|C|1957

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain JA

Peptide chain release factor 1

Chain L

50S ribosomal protein L14