HL_6B4V_082

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6B4V|1|B|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_082 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.125

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|B|C|2248
6B4V|1|B|U|2249
6B4V|1|B|G|2250
6B4V|1|B|OMG|2251
6B4V|1|B|G|2252
6B4V|1|B|G|2253
6B4V|1|B|C|2254
6B4V|1|B|G|2255
6B4V|1|B|G|2256

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain IA

Transfer RNA; tRNA

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27