HL_6B4V_085

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_085 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1175

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6B4V|1|B|C|2324
6B4V|1|B|G|2325
6B4V|1|B|C|2326
6B4V|1|B|A|2327
6B4V|1|B|A|2328
6B4V|1|B|G|2329
6B4V|1|B|G|2330
6B4V|1|B|G|2331

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain IA

Transfer RNA; tRNA

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27