HL_6B4V_089

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_089 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1935

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6B4V|1|B|C|2471
6B4V|1|B|G|2472
6B4V|1|B|U|2473
6B4V|1|B|C|2474
6B4V|1|B|C|2475
6B4V|1|B|A|2476
6B4V|1|B|C|2477
6B4V|1|B|A|2478
6B4V|1|B|G|2479

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain GA

50S ribosomal protein L36

Chain I

50S ribosomal protein L6