HL_6B4V_110

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6B4V|1|EB|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_110 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1304

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

6B4V|1|EB|C|342
6B4V|1|EB|U|343
6B4V|1|EB|A|344
6B4V|1|EB|C|345
6B4V|1|EB|G|346
6B4V|1|EB|G|347

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain GD

30S ribosomal protein S20

Chain PB

50S ribosomal protein L14

Chain UB

50S ribosomal protein L19