HL_6B4V_120

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_120 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.0889

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6B4V|1|EB|C|862
6B4V|1|EB|U|863
6B4V|1|EB|A|864
6B4V|1|EB|A|865
6B4V|1|EB|C|866
6B4V|1|EB|G|867

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain RC

30S ribosomal protein S5

Chain UC

30S ribosomal protein S8