HL_6B4V_127

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_127 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2925

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6B4V|1|EB|G|1164
6B4V|1|EB|C|1165
6B4V|1|EB|G|1166
6B4V|1|EB|A|1167
6B4V|1|EB|A|1169
6B4V|1|EB|A|1170
6B4V|1|EB|G|1171
6B4V|1|EB|C|1172

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain OC

30S ribosomal protein S2