HL_6B4V_131

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6B4V|1|EB|A|1451, 6B4V|1|EB|G|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_131 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2837

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6B4V|1|EB|C|1449
6B4V|1|EB|U|1450
6B4V|1|EB|A|1451
6B4V|1|EB|C|1452
6B4V|1|EB|G|1453
6B4V|1|EB|G|1454

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain GD

30S ribosomal protein S20