HL_6B4V_144

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6B4V|1|FB|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_144 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.1087

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6B4V|1|FB|G|382
6B4V|1|FB|U|383
6B4V|1|FB|U|384
6B4V|1|FB|C|385
6B4V|1|FB|G|386
6B4V|1|FB|U|387
6B4V|1|FB|G|388
6B4V|1|FB|G|389
6B4V|1|FB|A|390
6B4V|1|FB|G|391
6B4V|1|FB|C|392

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L28

Chain QB

50S ribosomal protein L15