HL_6B4V_146

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_146 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.0984

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6B4V|1|FB|C|462
6B4V|1|FB|G|463
6B4V|1|FB|U|464
6B4V|1|FB|G|465
6B4V|1|FB|A|466
6B4V|1|FB|G|467

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain IC

50S ribosomal protein L34

Chain KB

50S ribosomal protein L4