Loop HL_6B4V

3D structure

PDB id: 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
Description: Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å

Loop

Sequence: GGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAAUAGCUCAC
Length: 50 nucleotides
Bulged bases: 6B4V|1|FB|U|1061, 6B4V|1|FB|U|1066, 6B4V|1|FB|G|1068, 6B4V|1|FB|U|1078
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6B4V|1|FB|G|1055
6B4V|1|FB|G|1056
6B4V|1|FB|A|1057
6B4V|1|FB|G|1058
6B4V|1|FB|G|1059
6B4V|1|FB|U|1060
6B4V|1|FB|U|1061
6B4V|1|FB|G|1062
6B4V|1|FB|G|1063
6B4V|1|FB|C|1064
6B4V|1|FB|U|1065
6B4V|1|FB|U|1066
6B4V|1|FB|A|1067
6B4V|1|FB|G|1068
6B4V|1|FB|A|1069
6B4V|1|FB|A|1070
6B4V|1|FB|G|1071
6B4V|1|FB|C|1072
6B4V|1|FB|A|1073
6B4V|1|FB|G|1074
6B4V|1|FB|C|1075
6B4V|1|FB|C|1076
6B4V|1|FB|A|1077
6B4V|1|FB|U|1078
6B4V|1|FB|C|1079
6B4V|1|FB|C|1080
6B4V|1|FB|U|1081
6B4V|1|FB|U|1082
6B4V|1|FB|U|1083
6B4V|1|FB|A|1084
6B4V|1|FB|A|1085
6B4V|1|FB|A|1086
6B4V|1|FB|G|1087
6B4V|1|FB|A|1088
6B4V|1|FB|G|1089
6B4V|1|FB|U|1090
6B4V|1|FB|G|1091
6B4V|1|FB|C|1092
6B4V|1|FB|G|1093
6B4V|1|FB|U|1094
6B4V|1|FB|A|1095
6B4V|1|FB|A|1096
6B4V|1|FB|U|1097
6B4V|1|FB|A|1098
6B4V|1|FB|G|1099
6B4V|1|FB|C|1100
6B4V|1|FB|U|1101
6B4V|1|FB|C|1102
6B4V|1|FB|A|1103
6B4V|1|FB|C|1104

Current chains

Chain FB: 23S ribosomal RNA

Nearby chains

Chain KC: 50S ribosomal protein L36
Chain MB: 50S ribosomal protein L6

HL_6B4V_160