HL_6B4V_161

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGGAUGACCC

Length

11 nucleotides

Bulged bases

6B4V|1|FB|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|G|1169
6B4V|1|FB|G|1170
6B4V|1|FB|G|1171
6B4V|1|FB|G|1173
6B4V|1|FB|A|1174
6B4V|1|FB|U|1175
6B4V|1|FB|G|1176
6B4V|1|FB|A|1177
6B4V|1|FB|C|1178
6B4V|1|FB|C|1179
6B4V|1|FB|C|1180

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L18

Chain WB

50S ribosomal protein L21