HL_6B4V_185

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_185 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3564

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6B4V|1|FB|G|2302
6B4V|1|FB|G|2303
6B4V|1|FB|G|2304
6B4V|1|FB|A|2305
6B4V|1|FB|C|2306
6B4V|1|FB|G|2307
6B4V|1|FB|G|2308
6B4V|1|FB|A|2309
6B4V|1|FB|A|2310
6B4V|1|FB|A|2311
6B4V|1|FB|U|2312
6B4V|1|FB|C|2313
6B4V|1|FB|C|2314

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain GB

5S ribosomal RNA; 5S rRNA

Chain LB

50S ribosomal protein L5

Chain MC

Transfer RNA; tRNA