HL_6B4V_188

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_188 not in the Motif Atlas

Homologous match to HL_7RQB_058

Geometric discrepancy: 0.1131

The information below is about HL_7RQB_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6B4V|1|FB|C|2374
6B4V|1|FB|G|2375
6B4V|1|FB|A|2376
6B4V|1|FB|A|2377
6B4V|1|FB|A|2378
6B4V|1|FB|G|2379

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L33

Chain TB

50S ribosomal protein L18