HL_6B4V_199
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAUUCCG
- Length
- 7 nucleotides
- Bulged bases
- 6B4V|1|GB|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6B4V_199 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.1322
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.3
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6B4V|1|GB|C|38
6B4V|1|GB|A|39
6B4V|1|GB|U|40
6B4V|1|GB|U|41
6B4V|1|GB|C|42
6B4V|1|GB|C|43
6B4V|1|GB|G|44
Current chains
- Chain GB
- 5S ribosomal RNA
Nearby chains
- Chain FB
- Large subunit ribosomal RNA; LSU rRNA
- Chain FC
- 50S ribosomal protein L31
- Chain LB
- 50S ribosomal protein L5
- Chain TB
- 50S ribosomal protein L18
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