HL_6B4V_206

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6B4V|1|MC|C|16, 6B4V|1|MC|G|18, 6B4V|1|MC|G|19, 6B4V|1|MC|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_206 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.1988

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|MC|C|13
6B4V|1|MC|A|14
6B4V|1|MC|G|15
6B4V|1|MC|C|16
6B4V|1|MC|C|17
6B4V|1|MC|U|17|||A
6B4V|1|MC|G|18
6B4V|1|MC|G|19
6B4V|1|MC|U|20
6B4V|1|MC|A|21
6B4V|1|MC|G|22

Current chains

Chain MC

tRNA

Nearby chains

Chain FB

Large subunit ribosomal RNA; LSU rRNA

Chain LB

50S ribosomal protein L5