HL_6B4V_226

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

6B4V|1|FB|A|1453, 6B4V|1|FB|U|1454, 6B4V|1|FB|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_226 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5663

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6B4V|1|FB|C|1450
6B4V|1|FB|C|1451
6B4V|1|FB|A|1453
6B4V|1|FB|U|1454
6B4V|1|FB|G|1455
6B4V|1|FB|G|1456
6B4V|1|FB|A|1457
6B4V|1|FB|C|1458
6B4V|1|FB|G|1459
6B4V|1|FB|A|1460
6B4V|1|FB|G|1461

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain SB

50S ribosomal protein L17