HL_6B4V_228

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGUGAACCCCCGCCUCCGGGUGGGGGGGAG

Length

31 nucleotides

Bulged bases

6B4V|1|FB|U|2132, 6B4V|1|FB|C|2136, 6B4V|1|FB|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|C|2129
6B4V|1|FB|U|2130
6B4V|1|FB|G|2131
6B4V|1|FB|U|2132
6B4V|1|FB|G|2133
6B4V|1|FB|A|2134
6B4V|1|FB|A|2135
6B4V|1|FB|C|2136
6B4V|1|FB|C|2137
6B4V|1|FB|C|2138
6B4V|1|FB|C|2139
6B4V|1|FB|C|2140
6B4V|1|FB|G|2141
6B4V|1|FB|C|2142
6B4V|1|FB|C|2143
6B4V|1|FB|U|2144
6B4V|1|FB|C|2145
6B4V|1|FB|C|2146
6B4V|1|FB|G|2147
6B4V|1|FB|G|2148
6B4V|1|FB|G|2149
6B4V|1|FB|U|2150
6B4V|1|FB|G|2151
6B4V|1|FB|G|2152
6B4V|1|FB|G|2153
6B4V|1|FB|G|2154
6B4V|1|FB|G|2155
6B4V|1|FB|G|2156
6B4V|1|FB|G|2157
6B4V|1|FB|A|2158
6B4V|1|FB|G|2159

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain HB

Transfer RNA; tRNA

Chain XC

30S ribosomal protein S11