HL_6B4V_245

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|G|2303
6B4V|1|FB|G|2304
6B4V|1|FB|A|2305
6B4V|1|FB|C|2306
6B4V|1|FB|G|2307
6B4V|1|FB|G|2308
6B4V|1|FB|A|2309
6B4V|1|FB|A|2310
6B4V|1|FB|A|2311
6B4V|1|FB|U|2312
6B4V|1|FB|C|2313

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain LB

50S ribosomal protein L5

Chain MC

Transfer RNA; tRNA