HL_6BJX_002

3D structure

PDB id

6BJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUUGCAAAG

Length

9 nucleotides

Bulged bases

6BJX|1|A|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BJX_002 not in the Motif Atlas

Geometric match to HL_2R8S_002

Geometric discrepancy: 0.2997

The information below is about HL_2R8S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80008.1

Basepair signature

cWW-F-F-F-cSH-F

Number of instances in this motif group

1

Unit IDs

6BJX|1|A|C|166
6BJX|1|A|U|167
6BJX|1|A|U|168
6BJX|1|A|G|169
6BJX|1|A|C|170
6BJX|1|A|A|171
6BJX|1|A|A|172
6BJX|1|A|A|173
6BJX|1|A|G|174

Current chains

Chain A

Group I self-splicing intron P4-P6 domain

Nearby chains

Chain B

Group I self-splicing intron P4-P6 domain