HL_6BOH_012

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAGGAG

Length

7 nucleotides

Bulged bases

6BOH|1|A|G|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.2243

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6BOH|1|A|C|458
6BOH|1|A|G|464
6BOH|1|A|A|465
6BOH|1|A|G|466
6BOH|1|A|G|467
6BOH|1|A|A|468
6BOH|1|A|G|474

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain ZA

30S ribosomal protein S16