6BOH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6BOH_001 | 1/A/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_6BOH_219 | 1/A/81:88 | No text annotation | ||
| HL_6BOH_003 | 1/A/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_6BOH_004 | 1/A/186G:191A | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_6BOH_005 | 1/A/200:217 | No text annotation | ||
| HL_6BOH_006 | 1/A/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_6BOH_007 | 1/A/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6BOH_008 | 1/A/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_6BOH_009 | 1/A/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6BOH_010 | 1/A/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_6BOH_011 | 1/A/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_6BOH_012 | 1/A/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_6BOH_220 | 1/A/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
| HL_6BOH_014 | 1/A/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_6BOH_015 | 1/A/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6BOH_016 | 1/A/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_6BOH_017 | 1/A/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_6BOH_018 | 1/A/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_6BOH_019 | 1/A/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_6BOH_020 | 1/A/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6BOH_021 | 1/A/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_6BOH_022 | 1/A/993:1045 | No text annotation | ||
| HL_6BOH_023 | 1/A/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6BOH_024 | 1/A/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_6BOH_025 | 1/A/1132:1142 | No text annotation | ||
| HL_6BOH_026 | 1/A/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6BOH_027 | 1/A/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_6BOH_235 | 1/A/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6BOH_029 | 1/A/1356:1366 | No text annotation | geometric HL_4LFB_030 HL_06226.4 | |
| HL_6BOH_030 | 1/A/1449:1454 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_6BOH_031 | 1/A/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6BOH_032 | 1/B/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6BOH_033 | 1/B/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6BOH_034 | 1/B/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_6BOH_035 | 1/B/137B:141B | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6BOH_036 | 1/B/154:172 | No text annotation | ||
| HL_6BOH_037 | 1/B/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_6BOH_038 | 1/B/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_6BOH_039 | 1/B/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_6BOH_040 | 1/B/270K:270Q | No text annotation | homologous HL_8VTW_008 NA | |
| HL_6BOH_041 | 1/B/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6BOH_042 | 1/B/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6BOH_043 | 1/B/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_6BOH_236 | 1/B/383:391 | No text annotation | ||
| HL_6BOH_045 | 1/B/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6BOH_046 | 1/B/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_6BOH_047 | 1/B/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_6BOH_048 | 1/B/544:549 | GNRA | geometric HL_4V88_211 NA | |
| HL_6BOH_049 | 1/B/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_6BOH_050 | 1/B/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_6BOH_051 | 1/B/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_6BOH_052 | 1/B/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_6BOH_053 | 1/B/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6BOH_054 | 1/B/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6BOH_055 | 1/B/779:785 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_6BOH_056 | 1/B/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_6BOH_057 | 1/B/880:897 | No text annotation | ||
| HL_6BOH_058 | 1/B/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6BOH_059 | 1/B/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6BOH_060 | 1/B/1053:1056 | No text annotation | ||
| HL_6BOH_061 | 1/B/1092:1099 | No text annotation | ||
| HL_6BOH_237 | 1/B/1171:1178 | No text annotation | ||
| HL_6BOH_063 | 1/B/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6BOH_064 | 1/B/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6BOH_065 | 1/B/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_6BOH_066 | 1/B/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6BOH_067 | 1/B/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6BOH_068 | 1/B/1451:1459 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_6BOH_069 | 1/B/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_6BOH_222 | 1/B/1526:1546 | No text annotation | ||
| HL_6BOH_070 | 1/B/1533:1538 | No text annotation | ||
| HL_6BOH_071 | 1/B/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_6BOH_072 | 1/B/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
| HL_6BOH_073 | 1/B/1630B:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6BOH_074 | 1/B/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_6BOH_075 | 1/B/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6BOH_076 | 1/B/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6BOH_077 | 1/B/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_6BOH_078 | 1/B/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6BOH_079 | 1/B/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6BOH_223 | 1/B/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_6BOH_081 | 1/B/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6BOH_082 | 1/B/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6BOH_083 | 1/B/2123:2175 | No text annotation | ||
| HL_6BOH_084 | 1/B/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_6BOH_085 | 1/B/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_6BOH_086 | 1/B/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6BOH_087 | 1/B/2302:2314 | No text annotation | geometric HL_3SKI_003 HL_48417.5 | |
| HL_6BOH_088 | 1/B/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6BOH_089 | 1/B/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6BOH_090 | 1/B/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6BOH_091 | 1/B/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6BOH_092 | 1/B/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
| HL_6BOH_093 | 1/B/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6BOH_094 | 1/B/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_6BOH_095 | 1/B/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6BOH_096 | 1/B/2658:2663 | GNRA | geometric HL_5J7L_197 HL_37824.7 | |
| HL_6BOH_097 | 1/B/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6BOH_098 | 1/B/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6BOH_099 | 1/B/2793:2803 | No text annotation | homologous HL_4WF9_063 NA | |
| HL_6BOH_100 | 1/B/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6BOH_238 | 1/B/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_6BOH_102 | 1/C/38:44 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6BOH_103 | 1/C/86:90 | GNRA | homologous HL_7A0S_070 HL_37824.7 | |
| HL_6BOH_104 | 1/D/13:22 | No text annotation | homologous HL_5E81_219 NA | |
| HL_6BOH_225 | 1/D/30:40 | No text annotation | homologous HL_4WZD_209 NA | |
| HL_6BOH_105 | 1/D/31:39 | tRNA anticodon loop | homologous HL_5UD5_002 HL_77082.1 | |
| HL_6BOH_106 | 1/D/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5E6M_003 HL_28252.8 | |
| HL_6BOH_107 | 1/FB/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_6BOH_227 | 1/FB/81:88 | No text annotation | ||
| HL_6BOH_109 | 1/FB/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_6BOH_110 | 1/FB/186G:191A | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_6BOH_111 | 1/FB/200:217 | No text annotation | ||
| HL_6BOH_112 | 1/FB/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_6BOH_113 | 1/FB/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6BOH_114 | 1/FB/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_6BOH_115 | 1/FB/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6BOH_116 | 1/FB/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_6BOH_117 | 1/FB/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_6BOH_118 | 1/FB/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_6BOH_228 | 1/FB/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
| HL_6BOH_120 | 1/FB/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_6BOH_121 | 1/FB/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6BOH_122 | 1/FB/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_6BOH_123 | 1/FB/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_6BOH_124 | 1/FB/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_6BOH_125 | 1/FB/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_6BOH_126 | 1/FB/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6BOH_127 | 1/FB/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_6BOH_128 | 1/FB/993:1045 | No text annotation | ||
| HL_6BOH_129 | 1/FB/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6BOH_130 | 1/FB/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_6BOH_131 | 1/FB/1132:1142 | No text annotation | ||
| HL_6BOH_132 | 1/FB/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6BOH_133 | 1/FB/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_6BOH_239 | 1/FB/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6BOH_135 | 1/FB/1356:1366 | No text annotation | geometric HL_4LFB_030 HL_06226.4 | |
| HL_6BOH_136 | 1/FB/1449:1454 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_6BOH_137 | 1/FB/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6BOH_138 | 1/GB/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6BOH_139 | 1/GB/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6BOH_140 | 1/GB/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6BOH_141 | 1/GB/137B:141B | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6BOH_142 | 1/GB/154:172 | No text annotation | ||
| HL_6BOH_143 | 1/GB/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_6BOH_144 | 1/GB/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_6BOH_145 | 1/GB/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_6BOH_146 | 1/GB/270K:270Q | No text annotation | geometric HL_5J7L_018 HL_37344.1 | |
| HL_6BOH_147 | 1/GB/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6BOH_148 | 1/GB/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6BOH_149 | 1/GB/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_6BOH_240 | 1/GB/383:391 | No text annotation | ||
| HL_6BOH_151 | 1/GB/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6BOH_152 | 1/GB/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_6BOH_153 | 1/GB/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_6BOH_154 | 1/GB/544:549 | GNRA | geometric HL_4V88_211 NA | |
| HL_6BOH_155 | 1/GB/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_6BOH_156 | 1/GB/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_6BOH_157 | 1/GB/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_6BOH_158 | 1/GB/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_6BOH_159 | 1/GB/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6BOH_160 | 1/GB/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6BOH_161 | 1/GB/779:785 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_6BOH_162 | 1/GB/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_6BOH_163 | 1/GB/880:897 | No text annotation | ||
| HL_6BOH_164 | 1/GB/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6BOH_165 | 1/GB/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6BOH_166 | 1/GB/1053:1056 | No text annotation | ||
| HL_6BOH_167 | 1/GB/1092:1099 | No text annotation | ||
| HL_6BOH_241 | 1/GB/1171:1178 | No text annotation | ||
| HL_6BOH_169 | 1/GB/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6BOH_170 | 1/GB/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6BOH_171 | 1/GB/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_6BOH_172 | 1/GB/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6BOH_173 | 1/GB/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6BOH_174 | 1/GB/1451:1459 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_6BOH_175 | 1/GB/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_6BOH_230 | 1/GB/1526:1546 | No text annotation | ||
| HL_6BOH_176 | 1/GB/1533:1538 | No text annotation | ||
| HL_6BOH_177 | 1/GB/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_6BOH_178 | 1/GB/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
| HL_6BOH_242 | 1/GB/1630B:1635 | No text annotation | homologous HL_9DFE_039 HL_57176.2 | |
| HL_6BOH_180 | 1/GB/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_6BOH_181 | 1/GB/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6BOH_182 | 1/GB/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6BOH_183 | 1/GB/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_6BOH_184 | 1/GB/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6BOH_185 | 1/GB/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6BOH_231 | 1/GB/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_6BOH_187 | 1/GB/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6BOH_188 | 1/GB/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6BOH_189 | 1/GB/2123:2175 | No text annotation | ||
| HL_6BOH_190 | 1/GB/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_6BOH_191 | 1/GB/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_6BOH_192 | 1/GB/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6BOH_193 | 1/GB/2302:2314 | No text annotation | geometric HL_3SKI_003 HL_48417.5 | |
| HL_6BOH_194 | 1/GB/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6BOH_195 | 1/GB/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6BOH_196 | 1/GB/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6BOH_197 | 1/GB/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6BOH_198 | 1/GB/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
| HL_6BOH_199 | 1/GB/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6BOH_200 | 1/GB/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_6BOH_201 | 1/GB/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6BOH_202 | 1/GB/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_6BOH_203 | 1/GB/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6BOH_204 | 1/GB/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6BOH_205 | 1/GB/2793:2803 | No text annotation | homologous HL_4WF9_063 NA | |
| HL_6BOH_206 | 1/GB/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6BOH_243 | 1/GB/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_6BOH_208 | 1/HB/38:44 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6BOH_209 | 1/HB/86:90 | GNRA | homologous HL_7A0S_070 HL_37824.7 | |
| HL_6BOH_210 | 1/IA/13:22 | tRNA D-loop | homologous HL_4TUE_033 HL_93616.2 | |
| HL_6BOH_211 | 1/IA/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.6 | |
| HL_6BOH_212 | 1/IA/50:64 | No text annotation | homologous HL_5E81_238 NA | |
| HL_6BOH_213 | 1/IB/13:22 | No text annotation | homologous HL_5E81_219 NA | |
| HL_6BOH_214 | 1/IB/31:39 | tRNA anticodon loop | homologous HL_5UD5_002 HL_77082.1 | |
| HL_6BOH_215 | 1/IB/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5E6M_003 HL_28252.8 | |
| HL_6BOH_216 | 1/NC/13:22 | tRNA D-loop | homologous HL_4TUE_033 HL_93616.2 | |
| HL_6BOH_217 | 1/NC/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.6 | |
| HL_6BOH_218 | 1/NC/50:64 | No text annotation | homologous HL_5E81_238 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6BOH_002 | No text annotation | ||
| HL_6BOH_013 | No text annotation | ||
| HL_6BOH_028 | No text annotation | ||
| HL_6BOH_221 | No text annotation | ||
| HL_6BOH_044 | No text annotation | ||
| HL_6BOH_062 | No text annotation | ||
| HL_6BOH_080 | No text annotation | ||
| HL_6BOH_224 | tRNA D-loop | ||
| HL_6BOH_101 | GNRA with extra cWW | ||
| HL_6BOH_226 | No text annotation | ||
| HL_6BOH_108 | No text annotation | ||
| HL_6BOH_119 | No text annotation | ||
| HL_6BOH_134 | No text annotation | ||
| HL_6BOH_229 | No text annotation | ||
| HL_6BOH_150 | No text annotation | ||
| HL_6BOH_168 | No text annotation | ||
| HL_6BOH_179 | No text annotation | ||
| HL_6BOH_186 | No text annotation | ||
| HL_6BOH_232 | tRNA D-loop | ||
| HL_6BOH_207 | GNRA with extra cWW | ||
| HL_6BOH_233 | No text annotation | ||
| HL_6BOH_234 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6BOH_001 | 1/A/30:32, 1/A/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_6BOH_002 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_6BOH_003 | 1/A/47:52, 1/A/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_6BOH_382 | 1/A/54:56, 1/A/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6BOH_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_6BOH_006 | 1/A/67:69, 1/A/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_6BOH_007 | 1/A/129A:131, 1/A/231:232 | Minor groove platform | homologous IL_6CZR_119 NA | |
| IL_6BOH_008 | 1/A/132:136, 1/A/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6BOH_009 | 1/A/148:153, 1/A/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_6BOH_010 | 1/A/186A:186C, 1/A/191E:191G | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_6BOH_011 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_6BOH_383 | 1/A/249:252, 1/A/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_6BOH_013 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_6BOH_014 | 1/A/367:369, 1/A/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_6BOH_015 | 1/A/371:375, 1/A/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_6BOH_016 | 1/A/375:376, 1/A/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6BOH_017 | 1/A/409:416, 1/A/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_6BOH_018 | 1/A/446:450, 1/A/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_6CZR_130 NA | |
| IL_6BOH_019 | 1/A/450:455, 1/A/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_6BOH_020 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_6BOH_021 | 1/A/515:521, 1/A/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_6BOH_022 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_6BOH_023 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_6BOH_024 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_6BOH_025 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_6BOH_336 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_6BOH_027 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_6BOH_028 | 1/A/657:658, 1/A/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_6BOH_029 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_6BOH_338 | 1/A/673:677, 1/A/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_6BOH_031 | 1/A/683:688, 1/A/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_6BOH_384 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_6BOH_033 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_6BOH_034 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_6BOH_385 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.6 | |
| IL_6BOH_036 | 1/A/925:927, 1/A/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_6BOH_386 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6BOH_038 | 1/A/953:954, 1/A/1226:1228 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_6BOH_339 | 1/A/990:1047, 1/A/1210:1215 | No text annotation | ||
| IL_6BOH_039 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U | geometric IL_4LFB_042 IL_89505.4 | |
| IL_6BOH_340 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_6BOH_041 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_6BOH_042 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_6BOH_043 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_6BOH_044 | 1/A/1124:1127, 1/A/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_6BOH_045 | 1/A/1128:1132, 1/A/1142:1144 | No text annotation | ||
| IL_6BOH_343 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6BOH_387 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6BOH_048 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_6BOH_049 | 1/A/1259:1262, 1/A/1273:1276 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_6BOH_388 | 1/A/1303:1309, 1/A/1328:1334 | No text annotation | ||
| IL_6BOH_051 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_6BOH_344 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_6BOH_053 | 1/A/1405:1409, 1/A/1491:1496 | No text annotation | homologous IL_4LFB_058 NA | |
| IL_6BOH_054 | 1/A/1412:1414, 1/A/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6BOH_055 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6BOH_056 | 1/A/1431:1435, 1/A/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_6BOH_345 | 1/A/1431:1437, 1/A/1464:1469 | No text annotation | ||
| IL_6BOH_057 | 1/A/1435:1437, 1/A/1464:1466 | Isolated non-canonical cWW pair | homologous IL_6CZR_171 NA | |
| IL_6BOH_058 | 1/A/1440:1447, 1/A/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_6BOH_059 | 1/B/24:30, 1/B/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_6BOH_060 | 1/B/36:37, 1/B/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
| IL_6BOH_061 | 1/B/43:44, 1/B/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_6BOH_062 | 1/B/81:85, 1/B/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6BOH_063 | 1/B/183:184, 1/B/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6BOH_064 | 1/B/188:194, 1/B/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_6BOH_065 | 1/B/239:245, 1/B/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6BOH_067 | 1/B/273A:273B, 1/B/363F:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_6BOH_068 | 1/B/273G:279, 1/B/361:363A | No text annotation | homologous IL_8VTW_009 NA | |
| IL_6BOH_069 | 1/B/280:284, 1/B/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6BOH_070 | 1/B/288:290, 1/B/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6BOH_071 | 1/B/293:295, 1/B/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6BOH_072 | 1/B/481:484, 1/B/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_6BOH_073 | 1/B/564:566, 1/B/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_6BOH_074 | 1/B/606:609B, 1/B/618B:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_6BOH_075 | 1/B/672:674, 1/B/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6BOH_076 | 1/B/674:678, 1/B/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_6BOH_077 | 1/B/697:698, 1/B/763:765 | Single bulged A | homologous IL_7A0S_016 IL_31462.6 | |
| IL_6BOH_078 | 1/B/702:703, 1/B/728:730 | Single bulged G | geometric IL_4V9F_026 IL_00225.13 | |
| IL_6BOH_079 | 1/B/703:707, 1/B/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_6BOH_080 | 1/B/738:741, 1/B/756:758 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_51387.2 | |
| IL_6BOH_081 | 1/B/775:777, 1/B/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_6BOH_082 | 1/B/837:838, 1/B/940:942 | Single stack bend | homologous IL_5J7L_266 IL_90729.1 | |
| IL_6BOH_083 | 1/B/844:846, 1/B/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_6BOH_347 | 1/B/844:850, 1/B/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6BOH_084 | 1/B/846:850, 1/B/928:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_6BOH_085 | 1/B/858:862, 1/B/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_6BOH_086 | 1/B/862:863, 1/B/913:915 | Minor groove platform | homologous IL_4WF9_032 IL_51454.3 | |
| IL_6BOH_087 | 1/B/864:868, 1/B/909:912 | C-loop with bulged stacked A's | homologous IL_7RQB_029 NA | |
| IL_6BOH_389 | 1/B/875:879, 1/B/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_6BOH_089 | 1/B/952:954, 1/B/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6BOH_090 | 1/B/994:996, 1/B/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6BOH_091 | 1/B/998:1002, 1/B/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_6BOH_092 | 1/B/1004:1011, 1/B/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_6BOH_093 | 1/B/1011:1013, 1/B/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_6BOH_094 | 1/B/1018:1024, 1/B/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_6BOH_095 | 1/B/1024:1030, 1/B/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6BOH_096 | 1/B/1031:1034, 1/B/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_6BOH_097 | 1/B/1042:1051, 1/B/1108:1113 | No text annotation | ||
| IL_6BOH_390 | 1/B/1052:1053, 1/B/1056:1107 | No text annotation | ||
| IL_6BOH_098 | 1/B/1196:1198, 1/B/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_6BOH_099 | 1/B/1202:1206, 1/B/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6BOH_100 | 1/B/1208:1215, 1/B/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6BOH_101 | 1/B/1219:1221, 1/B/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6BOH_102 | 1/B/1262:1269, 1/B/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6BOH_103 | 1/B/1310:1313, 1/B/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6BOH_104 | 1/B/1319:1323, 1/B/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6BOH_105 | 1/B/1351:1355, 1/B/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6BOH_106 | 1/B/1357:1361, 1/B/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_6BOH_107 | 1/B/1415:1416, 1/B/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6BOH_108 | 1/B/1417:1421, 1/B/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_6BOH_109 | 1/B/1433:1435, 1/B/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_6BOH_110 | 1/B/1437:1440, 1/B/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6BOH_352 | 1/B/1448:1449, 1/B/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
| IL_6BOH_112 | 1/B/1450:1451, 1/B/1459:1461 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_6BOH_113 | 1/B/1469:1473, 1/B/1520:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_6BOH_114 | 1/B/1481:1483, 1/B/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_6BOH_115 | 1/B/1489:1491, 1/B/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6BOH_116 | 1/B/1526:1530, 1/B/1541:1546B | No text annotation | homologous IL_7RQB_063 NA | |
| IL_6BOH_117 | 1/B/1651:1656, 1/B/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_6BOH_118 | 1/B/1663:1665, 1/B/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_6BOH_119 | 1/B/1666:1669, 1/B/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_6BOH_353 | 1/B/1666:1674, 1/B/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_6BOH_120 | 1/B/1669:1674, 1/B/1990:1993 | Intercalated tWH | homologous IL_7A0S_062 IL_76758.2 | |
| IL_6BOH_121 | 1/B/1686:1691, 1/B/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6BOH_122 | 1/B/1770:1771, 1/B/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6BOH_123 | 1/B/1798:1804, 1/B/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6BOH_124 | 1/B/1837:1840, 1/B/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_7RQB_071 NA | |
| IL_6BOH_354 | 1/B/1841:1842, 1/B/1898:1901 | No text annotation | homologous IL_9DFE_072 IL_66635.5 | |
| IL_6BOH_126 | 1/B/1846:1849, 1/B/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6BOH_127 | 1/B/1851:1855, 1/B/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_6BOH_128 | 1/B/1856:1860, 1/B/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6BOH_129 | 1/B/1933:1934, 1/B/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 IL_22551.4 | |
| IL_6BOH_130 | 1/B/1934:1945, 1/B/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_6BOH_131 | 1/B/2050:2052, 1/B/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6BOH_132 | 1/B/2054:2057, 1/B/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_6BOH_133 | 1/B/2067:2069, 1/B/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6BOH_134 | 1/B/2070:2071, 1/B/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6BOH_135 | 1/B/2081:2083, 1/B/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6BOH_136 | 1/B/2085:2087, 1/B/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_6BOH_137 | 1/B/2107:2110, 1/B/2179:2182 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_6BOH_391 | 1/B/2108:2120, 1/B/2178:2181 | No text annotation | ||
| IL_6BOH_138 | 1/B/2110:2120, 1/B/2178:2179 | No text annotation | geometric IL_3U4M_002 IL_32056.1 | |
| IL_6BOH_139 | 1/B/2297:2299, 1/B/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_6BOH_140 | 1/B/2350:2353, 1/B/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6BOH_141 | 1/B/2401:2403, 1/B/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_6BOH_142 | 1/B/2453:2454, 1/B/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_6BOH_143 | 1/B/2454:2455, 1/B/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_6BOH_144 | 1/B/2457:2459, 1/B/2493:2494 | Major groove platform | geometric IL_7A0S_085 IL_48076.6 | |
| IL_6BOH_145 | 1/B/2459:2461, 1/B/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_6BOH_146 | 1/B/2466:2470, 1/B/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_6BOH_147 | 1/B/2507:2508, 1/B/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_6BOH_148 | 1/B/2510:2512, 1/B/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_6BOH_149 | 1/B/2512:2513, 1/B/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_6BOH_150 | 1/B/2522:2523, 1/B/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6BOH_152 | 1/B/2591:2592, 1/B/2601:2603 | Single bulged A | geometric IL_4V9F_090 IL_42771.1 | |
| IL_6BOH_153 | 1/B/2636:2640, 1/B/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6BOH_154 | 1/B/2652:2658, 1/B/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_6BOH_155 | 1/B/2680:2684, 1/B/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6BOH_156 | 1/B/2687:2691, 1/B/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_6BOH_157 | 1/B/2695:2696, 1/B/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6BOH_158 | 1/B/2737:2742, 1/B/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6BOH_159 | 1/B/2838:2839, 1/B/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6BOH_160 | 1/B/2843:2846, 1/B/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_6BOH_161 | 1/B/2847:2852, 1/B/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6BOH_162 | 1/C/17:18, 1/C/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.6 | |
| IL_6BOH_163 | 1/C/23:28, 1/C/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_6BOH_392 | 1/C/30:31, 1/C/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_68140.4 | |
| IL_6BOH_165 | 1/C/34:38, 1/C/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6BOH_166 | 1/C/71:79, 1/C/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_6BOH_167 | 1/FB/30:32, 1/FB/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_6BOH_168 | 1/FB/44:45, 1/FB/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_6BOH_169 | 1/FB/47:52, 1/FB/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_6BOH_393 | 1/FB/54:56, 1/FB/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6BOH_171 | 1/FB/63:66, 1/FB/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_6BOH_172 | 1/FB/67:69, 1/FB/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_6BOH_173 | 1/FB/129A:131, 1/FB/231:232 | Minor groove platform | homologous IL_6CZR_119 NA | |
| IL_6BOH_174 | 1/FB/132:136, 1/FB/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6BOH_175 | 1/FB/148:153, 1/FB/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_6BOH_176 | 1/FB/186A:186C, 1/FB/191E:191G | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_6BOH_177 | 1/FB/242:247, 1/FB/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_6BOH_394 | 1/FB/249:252, 1/FB/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_6BOH_179 | 1/FB/292:293, 1/FB/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_6BOH_180 | 1/FB/367:369, 1/FB/392:393 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_6BOH_181 | 1/FB/371:375, 1/FB/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6BOH_182 | 1/FB/375:376, 1/FB/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_6BOH_183 | 1/FB/409:416, 1/FB/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_6BOH_184 | 1/FB/446:450, 1/FB/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
| IL_6BOH_185 | 1/FB/450:455, 1/FB/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_6BOH_186 | 1/FB/504:511, 1/FB/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_6BOH_187 | 1/FB/515:521, 1/FB/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6BOH_188 | 1/FB/569:575, 1/FB/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_6BOH_189 | 1/FB/580:584, 1/FB/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_6BOH_190 | 1/FB/594:596, 1/FB/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_6BOH_191 | 1/FB/597:598, 1/FB/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_6BOH_361 | 1/FB/605:612, 1/FB/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_6BOH_193 | 1/FB/654:655, 1/FB/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_6BOH_194 | 1/FB/657:658, 1/FB/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_6BOH_195 | 1/FB/662:666, 1/FB/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_6BOH_363 | 1/FB/673:677, 1/FB/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_6BOH_197 | 1/FB/683:688, 1/FB/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_6BOH_395 | 1/FB/774:778, 1/FB/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_6BOH_199 | 1/FB/779:783, 1/FB/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_6BOH_200 | 1/FB/887:894, 1/FB/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_6BOH_396 | 1/FB/922:923, 1/FB/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.6 | |
| IL_6BOH_202 | 1/FB/925:927, 1/FB/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_6BOH_397 | 1/FB/933:935, 1/FB/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6BOH_204 | 1/FB/953:954, 1/FB/1226:1228 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_6BOH_364 | 1/FB/990:1047, 1/FB/1210:1215 | No text annotation | ||
| IL_6BOH_205 | 1/FB/1048:1050, 1/FB/1208:1209 | Single bulged U | geometric IL_4LFB_042 IL_89505.4 | |
| IL_6BOH_365 | 1/FB/1052:1056, 1/FB/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_6BOH_207 | 1/FB/1057:1058, 1/FB/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_6BOH_208 | 1/FB/1060:1061, 1/FB/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_6BOH_209 | 1/FB/1061:1063, 1/FB/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_6BOH_210 | 1/FB/1124:1127, 1/FB/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_6BOH_211 | 1/FB/1128:1132, 1/FB/1142:1144 | No text annotation | ||
| IL_6BOH_368 | 1/FB/1158:1161, 1/FB/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6BOH_398 | 1/FB/1247:1253, 1/FB/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6BOH_214 | 1/FB/1255:1258, 1/FB/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_6BOH_215 | 1/FB/1259:1262, 1/FB/1273:1276 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_6BOH_399 | 1/FB/1303:1309, 1/FB/1328:1334 | No text annotation | ||
| IL_6BOH_217 | 1/FB/1399:1401, 1/FB/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6BOH_369 | 1/FB/1401:1404, 1/FB/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_6BOH_219 | 1/FB/1405:1409, 1/FB/1491:1496 | No text annotation | homologous IL_4LFB_058 NA | |
| IL_6BOH_220 | 1/FB/1412:1414, 1/FB/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6BOH_221 | 1/FB/1416:1419, 1/FB/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6BOH_222 | 1/FB/1431:1435, 1/FB/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_6BOH_370 | 1/FB/1431:1437, 1/FB/1464:1469 | No text annotation | ||
| IL_6BOH_223 | 1/FB/1435:1437, 1/FB/1464:1466 | Isolated non-canonical cWW pair | geometric IL_6CZR_171 NA | |
| IL_6BOH_224 | 1/FB/1440:1447, 1/FB/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_6BOH_225 | 1/GB/24:30, 1/GB/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_6BOH_226 | 1/GB/36:37, 1/GB/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
| IL_6BOH_227 | 1/GB/43:44, 1/GB/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_6BOH_228 | 1/GB/81:85, 1/GB/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6BOH_229 | 1/GB/183:184, 1/GB/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6BOH_230 | 1/GB/188:194, 1/GB/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_6BOH_231 | 1/GB/239:245, 1/GB/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6BOH_233 | 1/GB/273A:273B, 1/GB/363F:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_6BOH_400 | 1/GB/273G:278, 1/GB/362:363A | No text annotation | ||
| IL_6BOH_235 | 1/GB/280:284, 1/GB/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6BOH_236 | 1/GB/288:290, 1/GB/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6BOH_237 | 1/GB/293:295, 1/GB/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6BOH_238 | 1/GB/481:484, 1/GB/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_6BOH_239 | 1/GB/564:566, 1/GB/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_6BOH_240 | 1/GB/606:609B, 1/GB/618B:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_6BOH_241 | 1/GB/672:674, 1/GB/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_6BOH_242 | 1/GB/674:678, 1/GB/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_6BOH_243 | 1/GB/697:698, 1/GB/763:765 | Single bulged A | homologous IL_7A0S_016 IL_31462.6 | |
| IL_6BOH_244 | 1/GB/702:703, 1/GB/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_6BOH_245 | 1/GB/703:707, 1/GB/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6BOH_246 | 1/GB/738:741, 1/GB/756:758 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_51387.2 | |
| IL_6BOH_247 | 1/GB/775:777, 1/GB/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_6BOH_248 | 1/GB/837:838, 1/GB/940:942 | Single stack bend | homologous IL_5J7L_266 IL_90729.1 | |
| IL_6BOH_249 | 1/GB/844:846, 1/GB/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_6BOH_372 | 1/GB/844:850, 1/GB/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6BOH_250 | 1/GB/846:850, 1/GB/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_6BOH_251 | 1/GB/858:862, 1/GB/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_6BOH_252 | 1/GB/862:863, 1/GB/913:915 | Minor groove platform | homologous IL_4WF9_032 IL_51454.3 | |
| IL_6BOH_253 | 1/GB/864:868, 1/GB/909:912 | C-loop with bulged stacked A's | homologous IL_7RQB_029 NA | |
| IL_6BOH_401 | 1/GB/875:879, 1/GB/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_6BOH_255 | 1/GB/952:954, 1/GB/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6BOH_256 | 1/GB/994:996, 1/GB/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6BOH_257 | 1/GB/998:1002, 1/GB/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_6BOH_258 | 1/GB/1004:1011, 1/GB/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_6BOH_259 | 1/GB/1011:1013, 1/GB/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_6BOH_260 | 1/GB/1018:1024, 1/GB/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_6BOH_261 | 1/GB/1024:1030, 1/GB/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6BOH_262 | 1/GB/1031:1034, 1/GB/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_6BOH_263 | 1/GB/1042:1051, 1/GB/1108:1113 | No text annotation | ||
| IL_6BOH_375 | 1/GB/1042:1053, 1/GB/1056:1113 | No text annotation | ||
| IL_6BOH_264 | 1/GB/1196:1198, 1/GB/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_6BOH_265 | 1/GB/1202:1206, 1/GB/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6BOH_266 | 1/GB/1208:1215, 1/GB/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6BOH_267 | 1/GB/1219:1221, 1/GB/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6BOH_268 | 1/GB/1262:1269, 1/GB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6BOH_269 | 1/GB/1310:1313, 1/GB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6BOH_270 | 1/GB/1319:1323, 1/GB/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6BOH_271 | 1/GB/1351:1355, 1/GB/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6BOH_272 | 1/GB/1357:1361, 1/GB/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_6BOH_273 | 1/GB/1415:1416, 1/GB/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6BOH_274 | 1/GB/1417:1421, 1/GB/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_6BOH_275 | 1/GB/1433:1435, 1/GB/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_6BOH_276 | 1/GB/1437:1440, 1/GB/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6BOH_376 | 1/GB/1448:1449, 1/GB/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
| IL_6BOH_278 | 1/GB/1450:1451, 1/GB/1459:1461 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_6BOH_279 | 1/GB/1469:1473, 1/GB/1520:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_6BOH_280 | 1/GB/1481:1483, 1/GB/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_6BOH_281 | 1/GB/1489:1491, 1/GB/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6BOH_282 | 1/GB/1526:1530, 1/GB/1541:1546B | No text annotation | homologous IL_7RQB_063 NA | |
| IL_6BOH_283 | 1/GB/1651:1656, 1/GB/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_6BOH_284 | 1/GB/1663:1665, 1/GB/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_6BOH_285 | 1/GB/1666:1669, 1/GB/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_6BOH_377 | 1/GB/1666:1674, 1/GB/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_6BOH_286 | 1/GB/1669:1674, 1/GB/1990:1993 | Intercalated tWH | geometric IL_7A0S_062 IL_76758.2 | |
| IL_6BOH_287 | 1/GB/1686:1691, 1/GB/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6BOH_288 | 1/GB/1770:1771, 1/GB/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6BOH_289 | 1/GB/1798:1804, 1/GB/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6BOH_290 | 1/GB/1837:1840, 1/GB/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_7RQB_071 NA | |
| IL_6BOH_378 | 1/GB/1841:1842, 1/GB/1898:1901 | No text annotation | homologous IL_9DFE_072 IL_66635.5 | |
| IL_6BOH_292 | 1/GB/1846:1849, 1/GB/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6BOH_293 | 1/GB/1851:1855, 1/GB/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_6BOH_294 | 1/GB/1856:1860, 1/GB/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6BOH_295 | 1/GB/1933:1934, 1/GB/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_6BOH_296 | 1/GB/1934:1945, 1/GB/1961:1964 | No text annotation | homologous IL_7RQB_077 NA | |
| IL_6BOH_297 | 1/GB/2050:2052, 1/GB/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6BOH_298 | 1/GB/2054:2057, 1/GB/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_6BOH_299 | 1/GB/2067:2069, 1/GB/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6BOH_300 | 1/GB/2070:2071, 1/GB/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6BOH_301 | 1/GB/2081:2083, 1/GB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6BOH_302 | 1/GB/2085:2087, 1/GB/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_6BOH_303 | 1/GB/2107:2110, 1/GB/2179:2182 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_6BOH_402 | 1/GB/2108:2120, 1/GB/2178:2181 | No text annotation | ||
| IL_6BOH_304 | 1/GB/2110:2120, 1/GB/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_6BOH_305 | 1/GB/2297:2299, 1/GB/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_6BOH_306 | 1/GB/2350:2353, 1/GB/2364:2367 | Double sheared | homologous IL_7A0S_081 IL_09705.15 | |
| IL_6BOH_307 | 1/GB/2401:2403, 1/GB/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_6BOH_308 | 1/GB/2453:2454, 1/GB/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_6BOH_309 | 1/GB/2454:2455, 1/GB/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_6BOH_310 | 1/GB/2457:2459, 1/GB/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.6 | |
| IL_6BOH_311 | 1/GB/2459:2461, 1/GB/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_6BOH_312 | 1/GB/2466:2470, 1/GB/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_6BOH_313 | 1/GB/2507:2508, 1/GB/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_6BOH_314 | 1/GB/2510:2512, 1/GB/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_6BOH_315 | 1/GB/2512:2513, 1/GB/2571:2574 | No text annotation | geometric IL_4WF9_096 IL_42626.2 | |
| IL_6BOH_316 | 1/GB/2522:2523, 1/GB/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6BOH_318 | 1/GB/2591:2592, 1/GB/2601:2603 | Single bulged A | geometric IL_4V9F_090 IL_42771.1 | |
| IL_6BOH_319 | 1/GB/2636:2640, 1/GB/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6BOH_320 | 1/GB/2652:2658, 1/GB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_6BOH_321 | 1/GB/2680:2684, 1/GB/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6BOH_322 | 1/GB/2687:2691, 1/GB/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_6BOH_323 | 1/GB/2695:2696, 1/GB/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6BOH_324 | 1/GB/2737:2742, 1/GB/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6BOH_325 | 1/GB/2838:2839, 1/GB/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6BOH_326 | 1/GB/2843:2846, 1/GB/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_6BOH_327 | 1/GB/2847:2852, 1/GB/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6BOH_328 | 1/HB/17:18, 1/HB/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.6 | |
| IL_6BOH_329 | 1/HB/23:28, 1/HB/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_6BOH_403 | 1/HB/30:31, 1/HB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_68140.4 | |
| IL_6BOH_331 | 1/HB/34:38, 1/HB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6BOH_332 | 1/HB/71:79, 1/HB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6BOH_004 | No text annotation | ||
| IL_6BOH_333 | No text annotation | ||
| IL_6BOH_334 | Tandem non-canonical cWW pairs | ||
| IL_6BOH_012 | No text annotation | ||
| IL_6BOH_335 | No text annotation | ||
| IL_6BOH_026 | No text annotation | ||
| IL_6BOH_337 | No text annotation | ||
| IL_6BOH_030 | No text annotation | ||
| IL_6BOH_032 | No text annotation | ||
| IL_6BOH_035 | Isolated non-canonical cWW with bulges | ||
| IL_6BOH_037 | No text annotation | ||
| IL_6BOH_040 | No text annotation | ||
| IL_6BOH_341 | No text annotation | ||
| IL_6BOH_342 | Minor groove platform with extra cWW | ||
| IL_6BOH_046 | No text annotation | ||
| IL_6BOH_047 | No text annotation | ||
| IL_6BOH_050 | No text annotation | ||
| IL_6BOH_052 | No text annotation | ||
| IL_6BOH_066 | No text annotation | ||
| IL_6BOH_346 | No text annotation | ||
| IL_6BOH_348 | No text annotation | ||
| IL_6BOH_088 | No text annotation | ||
| IL_6BOH_349 | No text annotation | ||
| IL_6BOH_350 | No text annotation | ||
| IL_6BOH_351 | No text annotation | ||
| IL_6BOH_111 | Multiple bulged bases | ||
| IL_6BOH_125 | No text annotation | ||
| IL_6BOH_355 | No text annotation | ||
| IL_6BOH_356 | No text annotation | ||
| IL_6BOH_151 | No text annotation | ||
| IL_6BOH_164 | Major groove minor groove platform with extra cWW | ||
| IL_6BOH_357 | No text annotation | ||
| IL_6BOH_170 | No text annotation | ||
| IL_6BOH_358 | No text annotation | ||
| IL_6BOH_359 | Tandem non-canonical cWW pairs | ||
| IL_6BOH_178 | No text annotation | ||
| IL_6BOH_360 | No text annotation | ||
| IL_6BOH_192 | No text annotation | ||
| IL_6BOH_362 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_6BOH_196 | No text annotation | ||
| IL_6BOH_198 | No text annotation | ||
| IL_6BOH_201 | Isolated non-canonical cWW with bulges | ||
| IL_6BOH_203 | No text annotation | ||
| IL_6BOH_206 | No text annotation | ||
| IL_6BOH_366 | No text annotation | ||
| IL_6BOH_367 | Minor groove platform with extra cWW | ||
| IL_6BOH_212 | No text annotation | ||
| IL_6BOH_213 | No text annotation | ||
| IL_6BOH_216 | No text annotation | ||
| IL_6BOH_218 | No text annotation | ||
| IL_6BOH_232 | No text annotation | ||
| IL_6BOH_234 | No text annotation | ||
| IL_6BOH_371 | No text annotation | ||
| IL_6BOH_373 | No text annotation | ||
| IL_6BOH_254 | No text annotation | ||
| IL_6BOH_374 | No text annotation | ||
| IL_6BOH_277 | Multiple bulged bases | ||
| IL_6BOH_291 | No text annotation | ||
| IL_6BOH_379 | No text annotation | ||
| IL_6BOH_380 | No text annotation | ||
| IL_6BOH_317 | No text annotation | ||
| IL_6BOH_330 | Major groove minor groove platform with extra cWW | ||
| IL_6BOH_381 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6BOH_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6BOH_051 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_6BOH_002 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_6BOH_052 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6BOH_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6BOH_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_6BOH_053 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6BOH_079 | 1/A/942:946, 1/A/1235:1237, 1/A/1337:1341 | No text annotation | ||
| J3_6BOH_080 | 1/A/954:962, 1/A/973:984, 1/A/1221:1226 | No text annotation | ||
| J3_6BOH_055 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation | homologous J3_6CZR_021 NA | |
| J3_6BOH_008 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6BOH_081 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_6BOH_010 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
| J3_6BOH_056 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_6BOH_011 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6BOH_012 | 1/B/30:31, 1/B/474:481, 1/B/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6BOH_057 | 1/B/30:31, 1/B/474:484, 1/B/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_6BOH_058 | 1/B/32:35, 1/B/445:461, 1/B/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_6BOH_013 | 1/B/56:57, 1/B/70:76, 1/B/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6BOH_059 | 1/B/269:270, 1/B/270:271, 1/B/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_6BOH_060 | 1/B/297:301, 1/B/316:325, 1/B/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_6BOH_015 | 1/B/683:689, 1/B/773:775, 1/B/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_6BOH_016 | 1/B/698:700, 1/B/732:736, 1/B/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6BOH_017 | 1/B/1051:1053, 1/B/1056:1092, 1/B/1099:1108 | No text annotation | ||
| J3_6BOH_018 | 1/B/1298:1303, 1/B/1625:1627, 1/B/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6BOH_019 | 1/B/1306:1309, 1/B/1605:1611, 1/B/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6BOH_020 | 1/B/1344:1350, 1/B/1381:1385, 1/B/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6BOH_061 | 1/B/1424:1429, 1/B/1564:1565, 1/B/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_6BOH_021 | 1/B/2091:2093, 1/B/2196:2205, 1/B/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6BOH_062 | 1/B/2282:2284, 1/B/2384:2395, 1/B/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_6BOH_022 | 1/B/2295:2297, 1/B/2321:2323, 1/B/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6BOH_023 | 1/B/2517:2520, 1/B/2545:2547, 1/B/2561:2567 | No text annotation | homologous J3_9DFE_017 J3_32601.5 | |
| J3_6BOH_024 | 1/B/2814:2815, 1/B/2831:2836, 1/B/2882:2886 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_6BOH_025 | 1/C/11:16, 1/C/68:69, 1/C/107:109 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_6BOH_063 | 1/D/4:28, 1/D/42:51, 1/D/63:69 | No text annotation | ||
| J3_6BOH_082 | 1/D/5:27, 1/D/43:51, 1/D/63:68 | No text annotation | ||
| J3_6BOH_026 | 1/FB/46:47, 1/FB/361:367, 1/FB/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6BOH_064 | 1/FB/46:52, 1/FB/359:367, 1/FB/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_6BOH_027 | 1/FB/586:588, 1/FB/651:654, 1/FB/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_6BOH_065 | 1/FB/586:588, 1/FB/651:655, 1/FB/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6BOH_028 | 1/FB/672:673, 1/FB/717:725, 1/FB/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6BOH_029 | 1/FB/826:829, 1/FB/857:861, 1/FB/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_6BOH_066 | 1/FB/936:939, 1/FB/1344:1350, 1/FB/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6BOH_083 | 1/FB/942:946, 1/FB/1235:1237, 1/FB/1337:1341 | No text annotation | ||
| J3_6BOH_084 | 1/FB/954:962, 1/FB/973:984, 1/FB/1221:1226 | No text annotation | ||
| J3_6BOH_068 | 1/FB/990:993, 1/FB/1045:1047, 1/FB/1210:1215 | No text annotation | homologous J3_6CZR_021 NA | |
| J3_6BOH_033 | 1/FB/1063:1068, 1/FB/1107:1113, 1/FB/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6BOH_085 | 1/FB/1073:1074, 1/FB/1083:1086, 1/FB/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_6BOH_035 | 1/FB/1116:1118, 1/FB/1155:1158, 1/FB/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
| J3_6BOH_069 | 1/FB/1116:1118, 1/FB/1155:1161, 1/FB/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_6BOH_036 | 1/FB/1237:1241, 1/FB/1296:1303, 1/FB/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6BOH_037 | 1/GB/30:31, 1/GB/474:481, 1/GB/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6BOH_070 | 1/GB/30:31, 1/GB/474:484, 1/GB/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_6BOH_071 | 1/GB/32:35, 1/GB/445:461, 1/GB/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_6BOH_038 | 1/GB/56:57, 1/GB/70:76, 1/GB/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6BOH_072 | 1/GB/269:270, 1/GB/270:271, 1/GB/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_6BOH_073 | 1/GB/297:301, 1/GB/316:325, 1/GB/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_6BOH_040 | 1/GB/683:689, 1/GB/773:775, 1/GB/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_6BOH_041 | 1/GB/698:700, 1/GB/732:736, 1/GB/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6BOH_042 | 1/GB/1051:1053, 1/GB/1056:1092, 1/GB/1099:1108 | No text annotation | ||
| J3_6BOH_043 | 1/GB/1298:1303, 1/GB/1625:1627, 1/GB/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6BOH_044 | 1/GB/1306:1309, 1/GB/1605:1611, 1/GB/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6BOH_045 | 1/GB/1344:1350, 1/GB/1381:1385, 1/GB/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6BOH_074 | 1/GB/1424:1429, 1/GB/1564:1565, 1/GB/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_6BOH_046 | 1/GB/2091:2093, 1/GB/2196:2205, 1/GB/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6BOH_075 | 1/GB/2282:2284, 1/GB/2384:2395, 1/GB/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_6BOH_047 | 1/GB/2295:2297, 1/GB/2321:2323, 1/GB/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6BOH_048 | 1/GB/2517:2520, 1/GB/2545:2547, 1/GB/2561:2567 | No text annotation | homologous J3_9DFE_017 J3_32601.5 | |
| J3_6BOH_049 | 1/GB/2814:2815, 1/GB/2831:2836, 1/GB/2882:2886 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_6BOH_050 | 1/HB/11:16, 1/HB/68:69, 1/HB/107:109 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_6BOH_076 | 1/IA/7:10, 1/IA/25:27, 1/IA/43:66 | No text annotation | ||
| J3_6BOH_077 | 1/IB/4:28, 1/IB/42:51, 1/IB/63:69 | No text annotation | ||
| J3_6BOH_086 | 1/IB/5:27, 1/IB/43:51, 1/IB/63:68 | No text annotation | ||
| J3_6BOH_087 | 1/NC/7:10, 1/NC/25:27, 1/NC/43:66 | No text annotation | ||
| J4_6BOH_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_6BOH_002 | 1/A/142:144, 1/A/178:183, 1/A/194:198, 1/A/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6BOH_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_6BOH_004 | 1/B/268:269, 1/B/370:375, 1/B/399:406, 1/B/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_6BOH_005 | 1/B/297:301, 1/B/316:319, 1/B/323:325, 1/B/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_6BOH_006 | 1/B/601:604, 1/B/624:628, 1/B/635:638, 1/B/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6BOH_007 | 1/B/1270:1276, 1/B/1294:1295, 1/B/1645:1648, 1/B/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_6BOH_008 | 1/B/1310:1314, 1/B/1338:1343, 1/B/1404:1405, 1/B/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_6BOH_009 | 1/B/1313:1314, 1/B/1338:1343, 1/B/1404:1405, 1/B/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_6BOH_010 | 1/B/1444:1445, 1/B/1466:1467, 1/B/1525:1526, 1/B/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_6BOH_011 | 1/B/1772:1776, 1/B/1788:1792, 1/B/1827:1830, 1/B/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_6BOH_012 | 1/B/1833:1835, 1/B/1905:1906, 1/B/1924:1933, 1/B/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6BOH_031 | 1/B/2285:2289, 1/B/2343:2347, 1/B/2370:2372, 1/B/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_6BOH_032 | 1/B/2643:2646, 1/B/2674:2676, 1/B/2731:2735, 1/B/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_6BOH_033 | 1/D/5:13, 1/D/22:27, 1/D/43:51, 1/D/63:68 | No text annotation | ||
| J4_6BOH_016 | 1/FB/115:122, 1/FB/239:240, 1/FB/286:289, 1/FB/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_6BOH_017 | 1/FB/142:144, 1/FB/178:183, 1/FB/194:198, 1/FB/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6BOH_018 | 1/FB/575:577, 1/FB/764:769, 1/FB/810:821, 1/FB/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_6BOH_019 | 1/GB/268:269, 1/GB/370:375, 1/GB/399:406, 1/GB/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_6BOH_020 | 1/GB/297:301, 1/GB/316:319, 1/GB/323:325, 1/GB/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_6BOH_021 | 1/GB/601:604, 1/GB/624:628, 1/GB/635:638, 1/GB/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6BOH_022 | 1/GB/1270:1276, 1/GB/1294:1295, 1/GB/1645:1648, 1/GB/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_6BOH_023 | 1/GB/1310:1314, 1/GB/1338:1343, 1/GB/1404:1405, 1/GB/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_6BOH_024 | 1/GB/1313:1314, 1/GB/1338:1343, 1/GB/1404:1405, 1/GB/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_6BOH_025 | 1/GB/1444:1445, 1/GB/1466:1467, 1/GB/1525:1526, 1/GB/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_6BOH_026 | 1/GB/1772:1776, 1/GB/1788:1792, 1/GB/1827:1830, 1/GB/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_6BOH_027 | 1/GB/1833:1835, 1/GB/1905:1906, 1/GB/1924:1933, 1/GB/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6BOH_028 | 1/GB/2285:2289, 1/GB/2343:2347, 1/GB/2370:2372, 1/GB/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_6BOH_034 | 1/GB/2643:2646, 1/GB/2674:2676, 1/GB/2731:2735, 1/GB/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_6BOH_035 | 1/IB/5:13, 1/IB/22:27, 1/IB/43:51, 1/IB/63:68 | No text annotation | ||
| J5_6BOH_001 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6BOH_002 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_6BOH_003 | 1/B/47:54, 1/B/116:121, 1/B/130:131, 1/B/148:150, 1/B/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_6BOH_004 | 1/B/268:270, 1/B/270:271, 1/B/366:375, 1/B/399:406, 1/B/421:424 | No text annotation | ||
| J5_6BOH_005 | 1/B/531:533, 1/B/560:564, 1/B/577:579, 1/B/1261:1262, 1/B/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_6BOH_006 | 1/B/584:589, 1/B/668:671, 1/B/809:812, 1/B/1195:1196, 1/B/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_6BOH_007 | 1/B/1674:1682, 1/B/1706:1707, 1/B/1751:1752, 1/B/1756:1764, 1/B/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_6BOH_008 | 1/B/2057:2064, 1/B/2446:2453, 1/B/2500:2506, 1/B/2583:2588, 1/B/2606:2611 | No text annotation | ||
| J5_6BOH_009 | 1/B/2074:2077, 1/B/2243:2246, 1/B/2258:2259, 1/B/2281:2282, 1/B/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_6BOH_010 | 1/FB/36:39, 1/FB/403:406, 1/FB/436:442, 1/FB/492:500, 1/FB/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6BOH_011 | 1/FB/58:61, 1/FB/106:113, 1/FB/314:316, 1/FB/337:339, 1/FB/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_6BOH_012 | 1/GB/47:54, 1/GB/116:121, 1/GB/130:131, 1/GB/148:150, 1/GB/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_6BOH_013 | 1/GB/268:270, 1/GB/270:271, 1/GB/366:375, 1/GB/399:406, 1/GB/421:424 | No text annotation | ||
| J5_6BOH_014 | 1/GB/531:533, 1/GB/560:564, 1/GB/577:579, 1/GB/1261:1262, 1/GB/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_6BOH_015 | 1/GB/584:589, 1/GB/668:671, 1/GB/809:812, 1/GB/1195:1196, 1/GB/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_6BOH_016 | 1/GB/1674:1682, 1/GB/1706:1707, 1/GB/1751:1752, 1/GB/1756:1764, 1/GB/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_6BOH_017 | 1/GB/2057:2064, 1/GB/2446:2453, 1/GB/2500:2506, 1/GB/2583:2588, 1/GB/2606:2611 | No text annotation | ||
| J5_6BOH_018 | 1/GB/2074:2077, 1/GB/2243:2246, 1/GB/2258:2259, 1/GB/2281:2282, 1/GB/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J6_6BOH_001 | 1/B/45:46, 1/B/179:183, 1/B/214:224, 1/B/231:235, 1/B/262:266, 1/B/426:433 | No text annotation | ||
| J6_6BOH_002 | 1/B/2074:2077, 1/B/2243:2246, 1/B/2258:2259, 1/B/2281:2284, 1/B/2384:2395, 1/B/2421:2435 | No text annotation | ||
| J6_6BOH_003 | 1/GB/45:46, 1/GB/179:183, 1/GB/214:224, 1/GB/231:235, 1/GB/262:266, 1/GB/426:433 | No text annotation | ||
| J6_6BOH_004 | 1/GB/2074:2077, 1/GB/2243:2246, 1/GB/2258:2259, 1/GB/2281:2284, 1/GB/2384:2395, 1/GB/2421:2435 | No text annotation | ||
| J7_6BOH_001 | 1/B/817:822, 1/B/835:836, 1/B/943:946, 1/B/971:976, 1/B/987:991, 1/B/1163:1164, 1/B/1185:1190 | No text annotation | ||
| J7_6BOH_002 | 1/GB/817:822, 1/GB/835:836, 1/GB/943:946, 1/GB/971:976, 1/GB/987:991, 1/GB/1163:1164, 1/GB/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6BOH_005 | No text annotation | ||
| J3_6BOH_006 | No text annotation | ||
| J3_6BOH_054 | No text annotation | ||
| J3_6BOH_007 | No text annotation | ||
| J3_6BOH_009 | No text annotation | ||
| J3_6BOH_014 | No text annotation | ||
| J3_6BOH_030 | No text annotation | ||
| J3_6BOH_031 | No text annotation | ||
| J3_6BOH_067 | No text annotation | ||
| J3_6BOH_032 | No text annotation | ||
| J3_6BOH_034 | No text annotation | ||
| J3_6BOH_039 | No text annotation | ||
| J3_6BOH_078 | No text annotation | ||
| J4_6BOH_013 | No text annotation | ||
| J4_6BOH_014 | No text annotation | ||
| J4_6BOH_015 | No text annotation | ||
| J4_6BOH_029 | No text annotation | ||
| J4_6BOH_030 | No text annotation |
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