HL_6BOH_048

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_048 not in the Motif Atlas

Geometric match to HL_4V88_211

Geometric discrepancy: 0.1642

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6BOH|1|B|C|544
6BOH|1|B|G|545
6BOH|1|B|C|546
6BOH|1|B|A|547
6BOH|1|B|A|548
6BOH|1|B|G|549

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain S

50S ribosomal protein L21