HL_6BOH_056

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

6BOH|1|B|U|827, 6BOH|1|B|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_056 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.12

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

6BOH|1|B|U|826
6BOH|1|B|U|827
6BOH|1|B|U|828
6BOH|1|B|A|829
6BOH|1|B|G|830
6BOH|1|B|G|831

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15