HL_6BOH_072

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6BOH|1|B|A|1614, 6BOH|1|B|A|1616, 6BOH|1|B|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_072 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1179

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6BOH|1|B|C|1612
6BOH|1|B|G|1613
6BOH|1|B|A|1614
6BOH|1|B|C|1615
6BOH|1|B|A|1616
6BOH|1|B|C|1617
6BOH|1|B|A|1618
6BOH|1|B|G|1619

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain EA

50S ribosomal protein L34

Chain T

50S ribosomal protein L22