3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGACACAG
Length
8 nucleotides
Bulged bases
6BOH|1|B|A|1614, 6BOH|1|B|A|1616, 6BOH|1|B|A|1618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6BOH_072 not in the Motif Atlas
Homologous match to HL_7A0S_040
Geometric discrepancy: 0.1179
The information below is about HL_7A0S_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

6BOH|1|B|C|1612
6BOH|1|B|G|1613
6BOH|1|B|A|1614
6BOH|1|B|C|1615
6BOH|1|B|A|1616
6BOH|1|B|C|1617
6BOH|1|B|A|1618
6BOH|1|B|G|1619

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain EA
50S ribosomal protein L34
Chain T
50S ribosomal protein L22

Coloring options:


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