HL_6BOH_106

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

G(5MU)(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

6BOH|1|D|C|56, 6BOH|1|D|U|60

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_106 not in the Motif Atlas

Homologous match to HL_5E6M_003

Geometric discrepancy: 0.5134

The information below is about HL_5E6M_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6BOH|1|D|G|53
6BOH|1|D|5MU|54
6BOH|1|D|PSU|55
6BOH|1|D|C|56
6BOH|1|D|A|57
6BOH|1|D|A|58
6BOH|1|D|A|59
6BOH|1|D|U|60
6BOH|1|D|C|61

Current chains

Chain D

tRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA