HL_6BOH_114

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_114 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.129

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6BOH|1|FB|C|320
6BOH|1|FB|A|321
6BOH|1|FB|C|322
6BOH|1|FB|U|323
6BOH|1|FB|G|324
6BOH|1|FB|A|325
6BOH|1|FB|G|326
6BOH|1|FB|A|327
6BOH|1|FB|C|328
6BOH|1|FB|A|329
6BOH|1|FB|C|330
6BOH|1|FB|G|331
6BOH|1|FB|G|332
6BOH|1|FB|G|333

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain ED

30S ribosomal protein S16

Chain ID

30S ribosomal protein S20