HL_6BOH_140

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

6BOH|1|GB|G|125, 6BOH|1|GB|A|126, 6BOH|1|GB|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_140 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.136

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6BOH|1|GB|G|123
6BOH|1|GB|G|124
6BOH|1|GB|G|125
6BOH|1|GB|A|126
6BOH|1|GB|A|127
6BOH|1|GB|C|128

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain JC

50S ribosomal protein L34

Chain ZB

50S ribosomal protein L23