HL_6BOH_143

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6BOH|1|GB|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_143 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.09

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6BOH|1|GB|G|194
6BOH|1|GB|A|195
6BOH|1|GB|A|196
6BOH|1|GB|A|197
6BOH|1|GB|C|198
6BOH|1|GB|A|199
6BOH|1|GB|U|200
6BOH|1|GB|C|201

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L28

Chain RB

50S ribosomal protein L15