HL_6BOH_149

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6BOH|1|GB|G|329, 6BOH|1|GB|A|330, 6BOH|1|GB|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_149 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0884

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6BOH|1|GB|G|327
6BOH|1|GB|U|328
6BOH|1|GB|G|329
6BOH|1|GB|A|330
6BOH|1|GB|A|331
6BOH|1|GB|A|332
6BOH|1|GB|G|333
6BOH|1|GB|C|334
6BOH|1|GB|C|335

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L24

Chain LB

50S ribosomal protein L4