HL_6BOH_168

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

6BOH|1|GB|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_168 not in the Motif Atlas

Homologous match to HL_7A0S_030

Geometric discrepancy: 0.5982

The information below is about HL_7A0S_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BOH|1|GB|G|1170
6BOH|1|GB|G|1171
6BOH|1|GB|G|1173
6BOH|1|GB|A|1174
6BOH|1|GB|U|1175
6BOH|1|GB|G|1176
6BOH|1|GB|A|1177
6BOH|1|GB|C|1178
6BOH|1|GB|C|1179

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain XB

50S ribosomal protein L21